View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_518 (Length: 236)

Name: NF10481A_low_518
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_518
NF10481A_low_518
[»] chr7 (9 HSPs)
chr7 (2-214)||(23983290-23983502)
chr7 (1-88)||(36449287-36449373)
chr7 (33-136)||(9107308-9107410)
chr7 (1-60)||(22567912-22567970)
chr7 (174-217)||(36449164-36449207)
chr7 (120-206)||(8745244-8745330)
chr7 (1-209)||(3478440-3478647)
chr7 (1-106)||(9427902-9428007)
chr7 (1-46)||(28534311-28534355)
[»] chr2 (16 HSPs)
chr2 (7-232)||(10173368-10173593)
chr2 (41-214)||(16952207-16952380)
chr2 (41-214)||(17022872-17023045)
chr2 (41-214)||(17060178-17060351)
chr2 (24-145)||(20572226-20572346)
chr2 (120-206)||(34230292-34230378)
chr2 (1-81)||(12343037-12343116)
chr2 (1-77)||(27879935-27880011)
chr2 (2-51)||(4974992-4975042)
chr2 (2-51)||(4992900-4992950)
chr2 (1-60)||(13699086-13699144)
chr2 (2-105)||(27740153-27740255)
chr2 (120-206)||(7696053-7696139)
chr2 (1-59)||(22884934-22884991)
chr2 (134-204)||(41086715-41086785)
chr2 (1-76)||(41086572-41086648)
[»] chr1 (13 HSPs)
chr1 (5-214)||(16577344-16577554)
chr1 (1-203)||(41126272-41126462)
chr1 (1-77)||(38548859-38548934)
chr1 (1-87)||(16148987-16149073)
chr1 (120-206)||(16147649-16147735)
chr1 (1-77)||(38544538-38544613)
chr1 (1-81)||(32882584-32882665)
chr1 (120-206)||(6583120-6583206)
chr1 (120-206)||(31290923-31291009)
chr1 (9-88)||(10785252-10785330)
chr1 (3-60)||(17033810-17033866)
chr1 (53-81)||(24659146-24659174)
chr1 (29-105)||(49820311-49820387)
[»] chr5 (8 HSPs)
chr5 (8-223)||(17853861-17854073)
chr5 (1-153)||(26045746-26045901)
chr5 (4-88)||(33258665-33258750)
chr5 (1-60)||(39183986-39184044)
chr5 (1-88)||(14302226-14302314)
chr5 (29-77)||(24072094-24072142)
chr5 (175-223)||(24072226-24072274)
chr5 (32-80)||(39024259-39024306)
[»] chr6 (5 HSPs)
chr6 (2-214)||(32935126-32935337)
chr6 (123-206)||(20701710-20701793)
chr6 (1-81)||(20701583-20701664)
chr6 (32-140)||(21266263-21266369)
chr6 (29-105)||(33968443-33968518)
[»] chr4 (10 HSPs)
chr4 (32-136)||(12296322-12296426)
chr4 (6-209)||(19673188-19673392)
chr4 (6-209)||(19815009-19815213)
chr4 (1-88)||(22810943-22811029)
chr4 (1-88)||(48098546-48098632)
chr4 (1-88)||(49747739-49747826)
chr4 (1-81)||(38637016-38637095)
chr4 (120-206)||(49528163-49528249)
chr4 (32-77)||(46487477-46487522)
chr4 (1-73)||(20632268-20632339)
[»] chr3 (9 HSPs)
chr3 (63-206)||(39021122-39021267)
chr3 (29-232)||(823246-823450)
chr3 (29-88)||(14879648-14879708)
chr3 (120-206)||(25647777-25647863)
chr3 (1-81)||(14194152-14194229)
chr3 (56-101)||(23328188-23328233)
chr3 (4-79)||(28937498-28937574)
chr3 (1-45)||(32010016-32010060)
chr3 (1-80)||(33143733-33143813)
[»] scaffold1613 (1 HSPs)
scaffold1613 (1-77)||(817-892)
[»] chr8 (5 HSPs)
chr8 (1-81)||(10248349-10248430)
chr8 (41-122)||(17720545-17720626)
chr8 (120-206)||(17656906-17656992)
chr8 (1-88)||(12197857-12197945)
chr8 (1-88)||(12442285-12442373)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-206)||(58218-58427)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-88)||(36920-37005)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 214
Target Start/End: Complemental strand, 23983502 - 23983290
Alignment:
Q  2 caccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 101  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  23983502 caccacctaaaacagactcattcacgaaaacaaccactgaaaaacgatatacataactacccatcatcactactcaccccaaaagaagaccgctctaaat 23983403  T
Q  102 gaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccga 201  Q
    |||||||||| ||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||||||  || |||||||||||||||||||||||||||||    
T  23983402 gaaattctcggtcctcatcatcaaagctgaaccagatccgaaaagctcatattcgaaagatcattcaactgtcaccacctctcaacctccgatacaccga 23983303  T
Q  202 aagaacacaaaaa 214  Q
    |||||||||||||    
T  23983302 aagaacacaaaaa 23983290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36449373 - 36449287
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    ||||||||||||| |||||  |||||| |||| ||| |||||||||||||| ||||||||| ||||||||||||||||| | ||||||    
T  36449373 tcaccacctaaaatagactacttcacg-aaacaaccgctgaaaaacgatatccataaccactcatcgtcactactcaccacaaaagaa 36449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 9107410 - 9107308
Alignment:
Q  33 gaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaa 132  Q
    ||||| || |||||||||| ||||||||||||||| ||||||||| ||| ||| ||  || ||||||||||||  | | ||||||||||||||||||||     
T  9107410 gaccattggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgag 9107312  T
Q  133 ccac 136  Q
    ||||    
T  9107311 ccac 9107308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22567912 - 22567970
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 60  Q
    |||||||||||||||||||  |||||| |||| |||||||||||||| ||| ||||||||    
T  22567912 tcaccacctaaaacagactctttcacg-aaacaaccactgaaaaacggtatccataacca 22567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 36449207 - 36449164
Alignment:
Q  174 caccacctctcaacctccgatacaccgaaagaacacaaaaataa 217  Q
    ||||||||||||||||||||| ||||||||||| || |||||||    
T  36449207 caccacctctcaacctccgatccaccgaaagaaaaccaaaataa 36449164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 8745330 - 8745244
Alignment:
Q  120 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    |||||||| ||| ||||||||||||| ||| |||  |||| ||||| | |||  ||| ||||||| ||||||||| |||||||||||    
T  8745330 caccaaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcgacctccgatccaccgaaagaa 8745244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3478647 - 3478440
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaa 99  Q
    |||||| || |||||||| | |||||| | ||||| |||| |||| |||||| ||| |||| || ||||||||||||||||| |||||| ||  ||| ||    
T  3478647 tcaccaactcaaacagacgtcttcacgaatacgac-actgtaaaagcgatatccatcaccaaccgtcgtcactactcacccc-aaagaacactcctcaaa 3478550  T
Q  100 atgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacacc 199  Q
    || ||| || |  |||||| |||||||| | | |||  || |||||  ||| || ||||| ||||||| |||  | ||||||||| | ||||||| ||||    
T  3478549 attaaactcccagtcctcaacaccaaagcttagccaactcagaaaagttcacatccgaaagatcattcagcttccgccacctctcgatctccgatccacc 3478450  T
Q  200 gaaagaacac 209  Q
    ||||||||||    
T  3478449 gaaagaacac 3478440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 9427902 - 9428007
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaa 100  Q
    |||| |||||||||| | |  |||||| | || |||||| ||||| ||||| ||||||||||| ||||||||||||| ||| ||| |  | | |||||||    
T  9427902 tcactacctaaaacaaattctttcacgaagacaaccactaaaaaatgatatccataaccacccgtcgtcactactcatccctaaatagcatccctctaaa 9428001  T
Q  101 tgaaat 106  Q
    ||||||    
T  9428002 tgaaat 9428007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28534311 - 28534355
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaac 46  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||    
T  28534311 tcaccacctaaaacagactctttcacg-aaacgaccactgaaaaac 28534355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 10173368 - 10173593
Alignment:
Q  7 cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 105  Q
    |||||||||||| | |||| | ||||||| |||| ||||||||||||||  ||||| ||||||||||||||||||| |||||| ||  ||| |||| |||    
T  10173368 cctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactcacccc-aaagaatactcctcaaaattaaa 10173466  T
Q  106 ttctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaaga 205  Q
     ||||  |||||| |||||||| ||| ||||||||||||| ||||||||| ||| |||||||  ||  ||||||||||| ||||||||| ||||||||||    
T  10173467 ctctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaaga 10173566  T
Q  206 acacaaaaataaccccaacaccaaact 232  Q
    |||| || | || ||||| ||||||||    
T  10173567 acaccaacaaaagcccaaaaccaaact 10173593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 16952207 - 16952380
Alignment:
Q  41 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 140  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  16952207 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 16952306  T
Q  141 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 214  Q
    ||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  16952307 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 16952380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 17022872 - 17023045
Alignment:
Q  41 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 140  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  17022872 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 17022971  T
Q  141 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 214  Q
    ||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  17022972 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 17023045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 17060178 - 17060351
Alignment:
Q  41 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 140  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  17060178 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 17060277  T
Q  141 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 214  Q
    ||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  17060278 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 17060351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 20572346 - 20572226
Alignment:
Q  24 cacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcacc 123  Q
    |||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||| | |||||| ||| |||||||||||| ||||  ||||||||||     
T  20572346 cacgaaaacgaccactgaaaaacgatatccataaccacc-atcgccactactcacctcaaaagaacacccctctaaatgaaactctcattcctcatcact 20572248  T
Q  124 aaagttgaaccacatccgaaaa 145  Q
    |||| | ||||| |||||||||    
T  20572247 aaagctaaaccatatccgaaaa 20572226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 34230378 - 34230292
Alignment:
Q  120 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    |||||||||||| ||||||| ||||| ||| |||| |||| ||||||| |||  ||||||||||||||||||||| |||||||||||    
T  34230378 caccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaa 34230292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 12343116 - 12343037
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 81  Q
    |||||||||||||||||||  |||||| |||||||| ||| ||||||||||| |  |||||| |||||||||||||||||||    
T  12343116 tcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcc--aaccactcatcgtcactactcacccc 12343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27879935 - 27880011
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 77  Q
    |||||||||||||||||||  |||| | |||||||| ||||||||||| || ||||||||| ||||  |||||||||    
T  27879935 tcaccacctaaaacagactccttcaggaaaacgacctctgaaaaacgaaatccataaccactcatcaccactactca 27880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 4975042 - 4974992
Alignment:
Q  2 caccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 51  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  4975042 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4974992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 4992950 - 4992900
Alignment:
Q  2 caccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 51  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  4992950 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4992900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13699086 - 13699144
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 60  Q
    ||||||||||||||| |||  || ||| ||||||||||||||||||| ||||||||||||    
T  13699086 tcaccacctaaaacacactcttttacg-aaacgaccactgaaaaacggtatacataacca 13699144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 27740255 - 27740153
Alignment:
Q  2 caccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 101  Q
    |||||||||| ||| |||  |||||| |||| ||||||||| |||||||| ||||||||| | ||| ||||||||| |||  || || ||| ||||||||    
T  27740255 caccacctaatacaaactccttcacg-aaactaccactgaagaacgatattcataaccactcgtcgccactactcatcccagaataacacccctctaaat 27740157  T
Q  102 gaaa 105  Q
    ||||    
T  27740156 gaaa 27740153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 7696139 - 7696053
Alignment:
Q  120 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    |||||||||||| ||||||||  ||| ||| ||| ||||| ||||||| |||  ||||||||| | |||| |||| |||||||||||    
T  7696139 caccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctcccgaccttcgatccaccgaaagaa 7696053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22884934 - 22884991
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacc 59  Q
    |||||||||||||||||||  |||||| ||||||||||||| |||||| || |||||||    
T  22884934 tcaccacctaaaacagactccttcacg-aaacgaccactgacaaacgaaatccataacc 22884991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 41086715 - 41086785
Alignment:
Q  134 cacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 204  Q
    ||||||| |||| ||| ||| ||||| ||||||| |||  ||||||||||| ||||||||| |||||||||    
T  41086715 cacatccaaaaagctcttatccgaaagatcattcagcttccaccacctctcgacctccgatccaccgaaag 41086785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 41086572 - 41086648
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 76  Q
    ||||||||||||||||||   || ||| || ||||||||  ||||||||||| ||  ||||||||||||||||||||    
T  41086572 tcaccacctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaataccacccatcgtcactactc 41086648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 16577554 - 16577344
Alignment:
Q  5 cacctaaaacagacttattcacgtaaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatga 103  Q
    |||||||||||||||  |||||| ||||||||||| |||||  ||||| ||||||||  ||||||| |||||||| || |||||| ||| ||||||| ||    
T  16577554 cacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcactccaaaagaacacccctctaaaaga 16577455  T
Q  104 aattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaa 203  Q
    || | ||  ||  ||||||||||||||| ||||||||||||| ||| ||||| ||| ||||||| |||  |||||||||||||||||| ||  |||||||    
T  16577454 aactttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctcaacctccaatctaccgaaa 16577355  T
Q  204 gaacacaaaaa 214  Q
    |||| ||||||    
T  16577354 gaacgcaaaaa 16577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 41126272 - 41126462
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacga-ccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaa 99  Q
    ||||||||||||||||||  ||||||| |||| | |||||| |||||||||| ||| ||||||||||||||||||||||||             ||||||    
T  41126272 tcaccacctaaaacagacgcattcacgaaaacaaaccactgtaaaacgatatccatcaccacccatcgtcactactcaccc-------------ctctaa 41126358  T
Q  100 atgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacacc 199  Q
    |||||| ||||  ||||||||||||||||||| ||||||| ||||| ||| ||| | ||| ||| ||| |||  || ||||||||||||||| || ||||    
T  41126359 atgaaactctcagtcctcatcaccaaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctcaacctccaatccacc 41126458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 38548859 - 38548934
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 77  Q
    |||||||||||||||||||  |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  38548859 tcaccacctaaaacagactctttcacg-aaacgatcactgaaaaacgatattcataaccacccatcgtcactactca 38548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 16149073 - 16148987
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaaga 87  Q
    ||||||||||||||||||   |||| ||||||||| ||||||||||||||| || || ||||||||||||||||||||||| |||||    
T  16149073 tcaccacctaaaacagacaccttcatgtaaacgactactgaaaaacgatatccaaaagcacccatcgtcactactcacccccaaaga 16148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 16147735 - 16147649
Alignment:
Q  120 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    |||||||| ||| ||||||||||||| |||||||  |||| |||||||  || |||||||||||| |||||||||  ||||||||||    
T  16147735 caccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctccacctccgatctaccgaaagaa 16147649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 38544538 - 38544613
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 77  Q
    |||||||||||||||||||  |||||| ||  || ||||| |||||||||| ||||||||| |||||||||||||||    
T  38544538 tcaccacctaaaacagactctttcacggaat-gatcactggaaaacgatatccataaccactcatcgtcactactca 38544613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 32882665 - 32882584
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcacccc 81  Q
    ||||| |||||||| ||||  |||||| |||||| ||||| ||| ||||||| ||  |||||||||||||||||||||||||    
T  32882665 tcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcacccc 32882584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 6583120 - 6583206
Alignment:
Q  120 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    |||||||| ||| || |||||||||| ||| |||  |||| |||| || |||  ||||||||||| ||||||||| |||||||||||    
T  6583120 caccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcgacctccgattcaccgaaagaa 6583206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 31290923 - 31291009
Alignment:
Q  120 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    |||||||| ||| ||||||||||||| ||| ||| ||||| ||||  |  ||  ||||||||||| ||||||||| |||||||||||    
T  31290923 caccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcgacctccgatccaccgaaagaa 31291009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 10785252 - 10785330
Alignment:
Q  9 taaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    |||||||||||  |||||| |||||||  |||||||| |||||| ||  ||||||||||||||||||||| |||| |||||    
T  10785252 taaaacagactccttcacgaaaacgacatctgaaaaaacgatatcca--accacccatcgtcactactcatcccgcaagaa 10785330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 17033866 - 17033810
Alignment:
Q  3 accacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 60  Q
    ||||||||||||| |||  |||||| ||||||||||| ||||||| ||||||||||||    
T  17033866 accacctaaaacatactctttcacg-aaacgaccacttaaaaacggtatacataacca 17033810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 24659174 - 24659146
Alignment:
Q  53 cataaccacccatcgtcactactcacccc 81  Q
    |||||||||||||||||||||||||||||    
T  24659174 cataaccacccatcgtcactactcacccc 24659146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 49820387 - 49820311
Alignment:
Q  29 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 105  Q
    |||||| |||||||||||||||| ||||||||||| ||| ||| || || ||| ||| |  ||| ||||||||||||    
T  49820387 aaacgagcactgaaaaacgatatccataaccacccgtcgccaccacacatcccaaaatatcacccctctaaatgaaa 49820311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 17853861 - 17854073
Alignment:
Q  8 ctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaatt 107  Q
    ||||||||||||  || ||| |||||| |||||||||||||||| ||||||||||||||  ||||||||||||| |||| ||||  ||||||||||||      
T  17853861 ctaaaacagactcctttacg-aaacgatcactgaaaaacgatatccataaccacccatcaccactactcaccccaaaagtagacacctctaaatgaaaca 17853959  T
Q  108 ctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaac 207  Q
    | | ||||||||||||| || ||| |||||||||||||  |||||||| ||| |||||||  ||  |||||||||||||| || | | ||||||||||||    
T  17853960 c-caatcctcatcaccatagctgagccacatccgaaaa-gtcatattctaaagatcattcaacttccaccacctctcaacttcaggtccaccgaaagaac 17854057  T
Q  208 acaaaaataaccccaa 223  Q
    |  ||||||| |||||    
T  17854058 attaaaataagcccaa 17854073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 26045746 - 26045901
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccga--aagaagaccgctct 97  Q
    |||||||||||||||||||| |||| | ||| |||||| | |||||||| || ||  ||| ||||||||||||||||||||| |  || || ||| |||     
T  26045746 tcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaagaaaaacacccctca 26045845  T
Q  98 aaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatat 153  Q
    |||| ||| |||| ||||| | ||||||||||||  ||| |||||||| |||||||    
T  26045846 aaattaaactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatat 26045901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 33258665 - 33258750
Alignment:
Q  4 ccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    ||||||||||||||  | |||||| || ||||||||| ||||||||||| ||  |||| |||||| ||||||||||||| ||||||    
T  33258665 ccacctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactcacccctaaagaa 33258750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39183986 - 39184044
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 60  Q
    |||||||||||||||||||   ||||| ||||||||||||||||||| ||| ||||||||    
T  39183986 tcaccacctaaaacagactctatcacg-aaacgaccactgaaaaacggtatccataacca 39184044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 14302226 - 14302314
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    ||||||||||||||||| |  ||| || ||||||||| || ||||||||||| ||  ||||||  ||||||||||||| ||| ||||||    
T  14302226 tcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaa 14302314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 24072094 - 24072142
Alignment:
Q  29 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 77  Q
    ||||||||||| |||||||||||  || | |||||||||||||||||||    
T  24072094 aaacgaccactaaaaaacgatatctatgatcacccatcgtcactactca 24072142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 24072226 - 24072274
Alignment:
Q  175 accacctctcaacctccgatacaccgaaagaacacaaaaataaccccaa 223  Q
    ||||||| |||||||||| | |||||||||||||| |||| ||||||||    
T  24072226 accacctttcaacctccggtccaccgaaagaacaccaaaaaaaccccaa 24072274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 39024259 - 39024306
Alignment:
Q  32 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccc 80  Q
    |||||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  39024259 cgaccattgaaaaacgatatccataa-cactcatcgtcactactcaccc 39024306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 214
Target Start/End: Original strand, 32935126 - 32935337
Alignment:
Q  2 caccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 101  Q
    |||||||||||| |||||  || ||| ||||| || || |||||||||||||||||||||||||| |||||||| ||||| ||| || | | ||||||||    
T  32935126 caccacctaaaatagactccttaacgaaaacgccccctcaaaaacgatatacataaccacccatcatcactactgacccc-aaaaaacatccctctaaat 32935224  T
Q  102 gaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccga 201  Q
    |||| || |  | ||||||||||||| |||   ||||||||||| ||||| ||||||| ||||| | |||  ||||||||| ||||||  ||  ||||||    
T  32935225 gaaactcacagtgctcatcaccaaagctgagttacatccgaaaaactcatgttcgaaagatcatgcagcttccaccacctcccaacctttgaaccaccga 32935324  T
Q  202 aagaacacaaaaa 214  Q
    |||||||| ||||    
T  32935325 aagaacactaaaa 32935337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 20701710 - 20701793
Alignment:
Q  123 caaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    ||||||||| |||||| |||||| ||| ||| ||||| ||||||| |||  ||| ||||||| ||||||||| |||||||||||    
T  20701710 caaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctctcgacctccgatccaccgaaagaa 20701793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 20701583 - 20701664
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 81  Q
    |||||||||| |||||||  ||||||| || | ||||||| ||||||||||| ||  || ||||||||||||||||||||||    
T  20701583 tcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcacccc 20701664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 21266369 - 21266263
Alignment:
Q  32 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 131  Q
    ||||||||||||||||| || || ||| ||| |||||||||||||||||| || ||| |||| | |||| ||||  ||| ||||||| |||||||  |||    
T  21266369 cgaccactgaaaaacgacatccagaacaacc-atcgtcactactcaccccaaaggaacaccgttgtaaaagaaa-actcaatcctcaacaccaaaactga 21266272  T
Q  132 accacatcc 140  Q
     ||||||||    
T  21266271 gccacatcc 21266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 33968443 - 33968518
Alignment:
Q  29 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 105  Q
    ||||||||||||||||| | ||| ||||||||  |||| |||||||||| ||| ||| || ||| ||||||||||||    
T  33968443 aaacgaccactgaaaaatggtatccataacca-gcatcatcactactcatcccaaaataacacccctctaaatgaaa 33968518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 12296426 - 12296322
Alignment:
Q  32 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 131  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| || ||| ||||||||||||  |||  ||||||||||| |||||||    
T  12296426 cgaccactgaaaaacgatatccataaccacccatcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaagttga 12296327  T
Q  132 accac 136  Q
     ||||    
T  12296326 gccac 12296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 19673392 - 19673188
Alignment:
Q  6 acctaaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaa 104  Q
    |||| |||||||| | |||||| ||| |||||||| |||| | |||| ||  |||| || ||||||||||||||||| |||||| ||  ||| |||| ||    
T  19673392 acctcaaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaaagaacactcctcaaaattaa 19673293  T
Q  105 attctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 204  Q
    | ||||  |||||| |||||||||| | |||||||||||||  |||||| | ||||||||||  |||  ||||| || || |||  |||| |||||||||    
T  19673292 actctcagtcctcaacaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccaccatctatcgaccgtcgatccaccgaaag 19673193  T
Q  205 aacac 209  Q
    |||||    
T  19673192 aacac 19673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 19815009 - 19815213
Alignment:
Q  6 acctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaa 104  Q
    |||| |||||||| | |||||| ||| |||||| | ||||| ||||| ||  |||| || | ||||||||||||||| |||||| ||  ||| | || ||    
T  19815009 acctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtcactactcacccccaaagaacacttctcaagattaa 19815108  T
Q  105 attctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 204  Q
    | ||||  |||||| |||||||||| | ||||||| |||||  || ||| ||||| ||||||  |||  ||||| ||||| ||||||| | |||||||||    
T  19815109 actctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatctctcgacctccggtccaccgaaag 19815208  T
Q  205 aacac 209  Q
    |||||    
T  19815209 aacac 19815213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22810943 - 22811029
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    ||||| |||||||||||||  |||||| || ||||||||| ||||||||||| |   |||| |||||||||||||||||||| ||||||    
T  22810943 tcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcct--accatccatcgtcactactcacccccaaagaa 22811029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 48098632 - 48098546
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    |||||||||||||||  |||  ||||  |||||||||||| ||||||||||| ||| || |||| ||||||||||||||||| ||||||    
T  48098632 tcaccacctaaaacactctt--tcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaa 48098546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 49747826 - 49747739
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    |||||||||||||||||||  |||||| ||||||||| || |||||||| || ||  ||| ||||| ||||||||||||||| ||||||    
T  49747826 tcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacaccgcccattgtcactactcacccctaaagaa 49747739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38637016 - 38637095
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 81  Q
    ||||||||||||||| |||  |||||| |||| ||| ||| ||||| ||||| ||  |||||||||||||||||||||||||    
T  38637016 tcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatcca--accacccatcgtcactactcacccc 38637095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 49528249 - 49528163
Alignment:
Q  120 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    |||||||| ||||||||||||| ||| ||  ||| ||||| |||||||  ||  ||||||||| | ||||||||| |||||||||||    
T  49528249 caccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccaccacctcccgacctccgatccaccgaaagaa 49528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 46487522 - 46487477
Alignment:
Q  32 cgaccactgaaaaacgatatacataaccacccatcgtcactactca 77  Q
    |||||||||||||||||||| |||||||||  |||| |||||||||    
T  46487522 cgaccactgaaaaacgatattcataaccacatatcgccactactca 46487477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20632268 - 20632339
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcacta 73  Q
    ||||| |||||||||||||  |||||  |||| ||||||||| ||||||| |||||||||||| ||| |||||    
T  20632268 tcaccccctaaaacagactctttcaca-aaacaaccactgaagaacgatacacataaccacccgtcgccacta 20632339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 39021122 - 39021267
Alignment:
Q  63 catcgtcactactcaccccgaaagaagaccgc-tctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcg-aaat 160  Q
    |||||||||||||||| || ||||||   ||| || |||||||| ||||  |||||| |||||||| | | ||||||||||||| ||||||| || |||     
T  39021122 catcgtcactactcacacccaaagaaacacgcgtcaaaatgaaactctcagtcctcaacaccaaagctaagccacatccgaaaaactcatatccgaaaag 39021221  T
Q  161 atcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    |||| || |||| ||||| ||||| ||||||||| |||| ||||||    
T  39021222 atcaatcagctaccaccatctctcgacctccgatccaccaaaagaa 39021267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 823246 - 823450
Alignment:
Q  29 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaag-aagaccgctctaaatgaaattctcgatcctcatcaccaaag 127  Q
    |||| |||||||||||||||||| ||||||||||| ||| | ||||||||||  |||| || ||| |||||| | |||  |    |||| || |||| |     
T  823246 aaacaaccactgaaaaacgatatccataaccacccttcgcctctactcaccctaaaagaaacacctctctaattcaaacaccatgtccttattaccataa 823345  T
Q  128 ttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaataaccccaacacc 227  Q
    |||| ||||||| |||||  || ||||  ||| ||||||| |||  | ||||||||||||||| | |  ||||||||||||| ||||||| ||||| ||     
T  823346 ttgagccacatctgaaaatgtcctattgaaaagatcattcagcttccgccacctctcaacctctggtctaccgaaagaacaccaaaataagcccaaaaca 823445  T
Q  228 aaact 232  Q
    |||||    
T  823446 aaact 823450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 14879708 - 14879648
Alignment:
Q  29 aaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    ||||||||||||||||| |||||| ||  ||||| ||||||||||| ||||||||||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaa 14879648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 25647863 - 25647777
Alignment:
Q  120 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    |||||||  ||| |||| |||||||| ||||||  ||||| |||||||  || |||||||||||| ||||||||| |||| ||||||    
T  25647863 caccaaaactgagccacgtccgaaaagctcataaccgaaagatcattcaactttcaccacctctcgacctccgatccaccaaaagaa 25647777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 14194229 - 14194152
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcacccc 81  Q
    |||||||||||||||||||   ||||| || || |||||||| |||||||| ||  |||| ||||||||||||||||||||    
T  14194229 tcaccacctaaaacagactccatcacgaaatcg-ccactgaataacgatatcca--accatccatcgtcactactcacccc 14194152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 23328188 - 23328233
Alignment:
Q  56 aaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 101  Q
    |||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  23328188 aaccacccatcgtcactactcacccccaaagaacaccactcaaaat 23328233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 28937498 - 28937574
Alignment:
Q  4 ccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacc 79  Q
    |||||||||||||||   |||||| ||  |||||||| ||||||||||| ||  ||||||||||| |||||||||||    
T  28937498 ccacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacc 28937574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32010060 - 32010016
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaa 45  Q
    |||||||||||||||||||  |||||| |||||||| ||||||||    
T  32010060 tcaccacctaaaacagactccttcacgaaaacgacctctgaaaaa 32010016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 33143733 - 33143813
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaa-aaacgatatacataaccacccatcgtcactactcaccc 80  Q
    ||||||||||||||| |||  |||||| |||| ||||||||| ||||||||| ||   ||| || ||||||||||||||||    
T  33143733 tcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcaccc 33143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 817 - 892
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 77  Q
    |||||||||||||||||||  |||||| ||  || ||||| |||||||||| ||||||||| |||||||||||||||    
T  817 tcaccacctaaaacagactctttcacggaat-gatcactggaaaacgatatccataaccactcatcgtcactactca 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 10248349 - 10248430
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 81  Q
    ||||||||||||||| |||  |||||| |||||||||||| |||||||| || |   | |||||||||||||||||||||||    
T  10248349 tcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcacccc 10248430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 17720545 - 17720626
Alignment:
Q  41 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcac 122  Q
    ||||| |||||||||||||||  |||||||||||||||||| |||  | ||| ||||||||||||  |||  ||||||||||    
T  17720545 aaaaaagatatacataaccacatatcgtcactactcaccccaaaaataaacccctctaaatgaaacactccgtcctcatcac 17720626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 17656906 - 17656992
Alignment:
Q  120 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 206  Q
    |||||||||||| |||| || ||||| ||| |||  |||| ||||||| |||  |||||||| || ||||||||| |||||||||||    
T  17656906 caccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcgacctccgatccaccgaaagaa 17656992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 12197857 - 12197945
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    |||||||||| |||||||   |||| | | ||||||||| |||| ||||||| ||  ||||||| ||||||||||||||||| ||||||    
T  12197857 tcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaa 12197945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 12442285 - 12442373
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    |||||||||| |||||||   |||| | | ||||||||| |||| ||||||| ||  ||||||| ||||||||||||||||| ||||||    
T  12442285 tcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaa 12442373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 58427 - 58218
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcaccccgaaag---aagaccgctc 96  Q
    |||||||| ||||||||||  |||||| ||||||||| || ||||| ||||| ||  || |||| |||||||||||||| || ||||   || ||  |||    
T  58427 tcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaacaacactcctc 58328  T
Q  97 taaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatac 196  Q
     |||| ||| ||||  |||  | |||||||| ||| |||||| |||||| ||| ||| ||||| || |||| |||  || || ||||| ||||||||| |    
T  58327 aaaattaaactctcagtcccgaacaccaaagctgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctcgacctccgatcc 58228  T
Q  197 accgaaagaa 206  Q
    ||||||||||    
T  58227 accgaaagaa 58218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 37005 - 36920
Alignment:
Q  1 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 88  Q
    |||||||||||||||||||  |||||| |||| ||||||| |||||||| || ||  |||| ||| |||||||||||||||| ||||||    
T  37005 tcaccacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatcca--accatccaccgtcactactcacccccaaagaa 36920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University