View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_522 (Length: 236)
Name: NF10481A_low_522
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_522 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 50407826 - 50407626
Alignment:
| Q |
17 |
acatcaaaggctatcaataagttaccgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcag |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50407826 |
acatcaaaggctatcaataagtgaccgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcag |
50407727 |
T |
|
| Q |
117 |
aaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggtatccgagtgaggttccaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50407726 |
aaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggtatccaagtgaggttccaat |
50407627 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
50407626 |
t |
50407626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 50385728 - 50385601
Alignment:
| Q |
86 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
185 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||||| || || ||||| | |||||||||||||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
50385728 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50385629 |
T |
|
| Q |
186 |
ttgtttttgggtatccgagtgaggttcc |
213 |
Q |
| |
|
|| | ||||| |||| ||||| ||||| |
|
|
| T |
50385628 |
ttttctttggatatcttagtgatgttcc |
50385601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 50390873 - 50390746
Alignment:
| Q |
86 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
185 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||||| || || ||||| | |||||||||||||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
50390873 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50390774 |
T |
|
| Q |
186 |
ttgtttttgggtatccgagtgaggttcc |
213 |
Q |
| |
|
|| | ||||| |||| ||||| ||||| |
|
|
| T |
50390773 |
ttttctttggatatcttagtgatgttcc |
50390746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 50394147 - 50394020
Alignment:
| Q |
86 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
185 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||||| || || ||||| | |||||||||||||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
50394147 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50394048 |
T |
|
| Q |
186 |
ttgtttttgggtatccgagtgaggttcc |
213 |
Q |
| |
|
|| | ||||| |||| ||||| ||||| |
|
|
| T |
50394047 |
ttttctttggatatcttagtgatgttcc |
50394020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University