View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_526 (Length: 235)
Name: NF10481A_low_526
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_526 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 36075092 - 36075318
Alignment:
| Q |
3 |
gaaaagggggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaaaataattatctgaatt |
102 |
Q |
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| T |
36075092 |
gaaaagggggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaaaataattatctgaatt |
36075191 |
T |
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| Q |
103 |
tgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaataagtcgagagaaatttaaat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36075192 |
tgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaataagtagagagaaatttaaat |
36075291 |
T |
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| Q |
203 |
ctgagtgtctcaaaagatgaaacatct |
229 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36075292 |
ctgagtgtctcaaaagatgaaacatct |
36075318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 42169069 - 42169295
Alignment:
| Q |
3 |
gaaaagggggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaaaataattatctgaatt |
102 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42169069 |
gaaaagagggaggaaaatgcagtgttgattttagagagagaaagcggtactggttactttggttgtatagagataaagtgacaaaataattatctgaatt |
42169168 |
T |
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| Q |
103 |
tgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaataagtcgagagaaatttaaat |
202 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
42169169 |
tgttacattcatctttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaagaagtagagagaaatttaaat |
42169268 |
T |
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| Q |
203 |
ctgagtgtctcaaaagatgaaacatct |
229 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42169269 |
ctgagtgtctcaaaagatgaaacatct |
42169295 |
T |
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Back To:
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