View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_527 (Length: 234)

Name: NF10481A_low_527
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_527
NF10481A_low_527
[»] scaffold0016 (1 HSPs)
scaffold0016 (21-212)||(53813-54004)
[»] chr4 (2 HSPs)
chr4 (110-173)||(15707358-15707421)
chr4 (168-212)||(15707440-15707484)
[»] scaffold0642 (2 HSPs)
scaffold0642 (110-173)||(4102-4165)
scaffold0642 (168-212)||(4184-4228)
[»] scaffold0345 (2 HSPs)
scaffold0345 (110-173)||(14014-14077)
scaffold0345 (168-212)||(14096-14140)
[»] scaffold0105 (2 HSPs)
scaffold0105 (110-173)||(24904-24967)
scaffold0105 (168-212)||(24841-24885)
[»] scaffold1526 (2 HSPs)
scaffold1526 (110-165)||(1249-1304)
scaffold1526 (168-212)||(1173-1217)
[»] chr8 (2 HSPs)
chr8 (110-173)||(44495504-44495567)
chr8 (171-212)||(44495589-44495630)
[»] chr2 (2 HSPs)
chr2 (110-165)||(3378229-3378284)
chr2 (168-212)||(3378316-3378360)
[»] chr6 (1 HSPs)
chr6 (25-109)||(21221835-21221922)


Alignment Details
Target: scaffold0016 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 54004 - 53813
Alignment:
Q  21 agtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttactttctc 120  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004 agtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttactttctc 53905  T
Q  121 tctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactctagagcggtgagtggcttcgttctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53904 tctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactccagagcggtgagtggcttcgttctt 53813  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 15707358 - 15707421
Alignment:
Q  110 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707358 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 15707421  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 15707440 - 15707484
Alignment:
Q  168 acccatccatgaattcactctagagcggtgagtggcttcgttctt 212  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15707440 acccatccatgaattcactccagatcggtgagtggcttcgttctt 15707484  T

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Target: scaffold0642 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 4102 - 4165
Alignment:
Q  110 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 173  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4102 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 4165  T

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Target: scaffold0642; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 4184 - 4228
Alignment:
Q  168 acccatccatgaattcactctagagcggtgagtggcttcgttctt 212  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4184 acccatccatgaattcactccagatcggtgagtggcttcgttctt 4228  T

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Target: scaffold0345 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 14014 - 14077
Alignment:
Q  110 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 173  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14014 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 14077  T

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Target: scaffold0345; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 14096 - 14140
Alignment:
Q  168 acccatccatgaattcactctagagcggtgagtggcttcgttctt 212  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14096 acccatccatgaattcactccagatcggtgagtggcttcgttctt 14140  T

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Target: scaffold0105 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 24967 - 24904
Alignment:
Q  110 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 173  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24967 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 24904  T

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Target: scaffold0105; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 24885 - 24841
Alignment:
Q  168 acccatccatgaattcactctagagcggtgagtggcttcgttctt 212  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  24885 acccatccatgaattcactccagatcggtgagtggcttcgttctt 24841  T

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Target: scaffold1526 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 1304 - 1249
Alignment:
Q  110 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1304 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 1249  T

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Target: scaffold1526; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 1217 - 1173
Alignment:
Q  168 acccatccatgaattcactctagagcggtgagtggcttcgttctt 212  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  1217 acccatccatgaattcactccagatcggtgagtggcttcgttctt 1173  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 44495504 - 44495567
Alignment:
Q  110 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 173  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  44495504 cttactttctctctaacatcattccaatccggttcttcttctctcacactccattcatacccat 44495567  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 44495589 - 44495630
Alignment:
Q  171 catccatgaattcactctagagcggtgagtggcttcgttctt 212  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  44495589 catccatgaattcactccagatcggtgagtggcttcgttctt 44495630  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 3378229 - 3378284
Alignment:
Q  110 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378229 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 3378284  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 3378316 - 3378360
Alignment:
Q  168 acccatccatgaattcactctagagcggtgagtggcttcgttctt 212  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3378316 acccatccatgaattcactccagatcggtgagtggcttcgttctt 3378360  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
Q  25 ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata 109  Q
    |||| |||||||||||||||||||||   |||| | || |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  21221835 ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata 21221922  T

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