View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_53 (Length: 416)
Name: NF10481A_low_53
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_53 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 219733 - 220134
Alignment:
| Q |
8 |
tgagatgaaatttgattttaaggaatattaaatgtgtaggagtttgtgaaggcagtgattgcttatcagaaaaggttgaatactttaacatcaatgccaa |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
219733 |
tgagatgaaatttgattttgaggaatattaaatgtgtaggagtttgtgaaggcagtgattgcttttcagaaaaggctgaatactttaacatcagtgccaa |
219832 |
T |
|
| Q |
108 |
aacctatgaaactaaacaaggaaatcaagaacaaaaggaggattataatgcgtaccttttcagttgcaaaaaacctatacactaccggccgtgggaactg |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| || |
|
|
| T |
219833 |
aacgtatgaaactaaacaaggaaatcaagaacaaaaggaggattataatgcgtagcttttcagttgcaaaaaaactatacactaccggtcgtgggaaatg |
219932 |
T |
|
| Q |
208 |
ttcttccaaagagcgggagcttgaagctggagccaaatttctcgaggtaacaaattataaacacaattaatcacaatcgcggatatagtcgcattcgcaa |
307 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
219933 |
ttcttccaaagagtgggagcttgaagctggagccaaatttctcgaggtaacaaattataaacacaattaatcacaatcgcagatatagtcgcattcgcga |
220032 |
T |
|
| Q |
308 |
agaattgcaattaatcgtggtttatataatctcaattatggttgtagaattataaaaattgacgatgttccaaatcgtcaattatgatagtgaatgagtt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
220033 |
agaattgcaattaatcgtggtttatataatctcaattatggttgtagaattataaaaattgacgatgttccaaatcgtcaattatgatagtgaatgagtt |
220132 |
T |
|
| Q |
408 |
ag |
409 |
Q |
| |
|
|| |
|
|
| T |
220133 |
ag |
220134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University