View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_531 (Length: 234)
Name: NF10481A_low_531
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_531 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 44883870 - 44883736
Alignment:
| Q |
83 |
cttaaaacgttaagcatgtaaccnnnnnnnttataaaccttaagaaaaataatcaatgacaaatgttagttgttagattatt-ttttctccatcatcaac |
181 |
Q |
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| T |
44883870 |
cttaaaacgttaagcatgtaaccaaaaaaattataaaccttaagaaaaataatcaatgacaaatgttagttgttagattatttttttctccatcatcaac |
44883771 |
T |
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| Q |
182 |
ctaaaaacttccaacttcctatccttaacttaaac |
216 |
Q |
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| T |
44883770 |
gtaaaaacttccaacttcttatccttaacttaaac |
44883736 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 44886525 - 44886467
Alignment:
| Q |
23 |
ttgaatgacacatgttccacataatttgaatgacaaatgttcaatatcaaaggtataca |
81 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44886525 |
ttgaatgacaaatgttccacataatttgaatgacaaatgttcaatatcaaaggtataca |
44886467 |
T |
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