View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_536 (Length: 233)
Name: NF10481A_low_536
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_536 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 34683208 - 34683397
Alignment:
| Q |
25 |
gacatcatgaagattatgagcagaacctctatgaaagtgggagacaactctgcaaatgtcctaagagagttggcaagtacaataaagaaaatgaaaaaat |
124 |
Q |
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| T |
34683208 |
gacatcatgaagattatgagcagaacctctataaaagtgggagacaactctgcaaatgtcctaagagagttggcaagtacaataaagaaaatgaaaaaat |
34683307 |
T |
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| Q |
125 |
caaacaaacttgatattctagtcatagagatgaataatgcagccctagagcttcagaatttattaaaatcttatccaaacacacaaaaaa |
214 |
Q |
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| T |
34683308 |
caaacaaacttgatattctagtcatagagatgaataatgcagccctagagcttcagaatttattaaaatcttatccaaacacacaaaaaa |
34683397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 34699430 - 34699611
Alignment:
| Q |
28 |
atcatgaagattatgagcagaacctctatgaaagtgggagacaactctgcaaatgtcctaagagagttggcaagtacaataaagaaaatgaaaaaatcaa |
127 |
Q |
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|||| |||||||||||||| ||| || ||||||||||||| ||||||||| | |||| |||||||| | ||| |||||| || || |||| ||| |||| |
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| T |
34699430 |
atcaagaagattatgagcacaacatcaatgaaagtgggagccaactctgcgagtgtcttaagagagctatcaattacaatcaataatatgacaaagtcaa |
34699529 |
T |
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| Q |
128 |
acaaacttgatattctagtcatagagatgaataatgcagccctagagcttcagaatttattaaaatcttatccaaacacaca |
209 |
Q |
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| T |
34699530 |
agaaacttgatagtttggtcaaagagatgaatattgctacacaagagctacaaaatttattaaaatcatattcaaacacaca |
34699611 |
T |
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