View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_537 (Length: 233)
Name: NF10481A_low_537
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_537 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 27760823 - 27761026
Alignment:
| Q |
14 |
tggacatcaattaaagattttagtagtttttaataatattcaacaaagataagaagaaccaaagaaacaaaaagcgtttaaaataccaacaaatccgagt |
113 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27760823 |
tggacagcaattaaagattttagtagtttttaataatattcaacaaagataagaagaaccaaagaaacaaaaagcatttaaaataccaacaaatccgagt |
27760922 |
T |
|
| Q |
114 |
tgcttaaaaagcatatatataggacaacttagacaaccttagaaaaggttatggcagaacaataaacaattccacacaacctttcaggaaactccaagaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
27760923 |
tgcttaaaaagcatatatataggacaacttagacaaccttagaaaaggttatggcagaacaataaacaattccacacatcctttcaggaaactcccagaa |
27761022 |
T |
|
| Q |
214 |
ttat |
217 |
Q |
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|||| |
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|
| T |
27761023 |
ttat |
27761026 |
T |
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