View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_538 (Length: 233)
Name: NF10481A_low_538
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_538 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 12543818 - 12544029
Alignment:
| Q |
12 |
tgttagcttgggcattctttcttcgattgttcactgttgaatgctataattgtttgaaaaagggtcatattatttcaaattgttgtcgatattgtatgac |
111 |
Q |
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| T |
12543818 |
tgttagcttgggcattctttcttcgattgttcactgctgaatgctataattgtttgaaaaagggtcatattatttcaaattgttgtcgatattgtatgac |
12543917 |
T |
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| Q |
112 |
agtcggacacttgattcataattgtttcactcgtcctcgacgatctgatcagaatatgaatcaacctcgtcccaattcttccgagtctatacttacaact |
211 |
Q |
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| T |
12543918 |
agtcggacacttgattcataattgtttcactcgtcctcgacgatctgatcagaatatgaatcaatctcgtcccaattcttccgagtctatacttacaact |
12544017 |
T |
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| Q |
212 |
tatgatgtccat |
223 |
Q |
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|||||||||||| |
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| T |
12544018 |
tatgatgtccat |
12544029 |
T |
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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 53018406 - 53018277
Alignment:
| Q |
46 |
tgttgaatgctataattgtttgaaaaagggtcatattatttcaaattgttgtcgatattgtatgacagtcggacacttgattcataattgtttcactcgt |
145 |
Q |
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| T |
53018406 |
tgttgaatgttataactgcatgaaaaagggtcatattacttcaaattgttgtcgatactgcaagacagccggtcacttgattcaaaattgtctcactcgt |
53018307 |
T |
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| Q |
146 |
cctcgacgatctgatcagaatatgaatcaa |
175 |
Q |
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| T |
53018306 |
cctccacggtctgatcaaaatcggaatcaa |
53018277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 16501803 - 16501940
Alignment:
| Q |
47 |
gttgaatgctataattgtttgaaaaagggtcatattatttcaaattgttgtcgatattgtatgacagtcggacacttgattcataattgtttcactcgtc |
146 |
Q |
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| T |
16501803 |
gttgaatgttataattgcttgaaaaagggtcatattgcttcaaattgttgtcgatactgcaagacagccaaacatttgattcaaaattgtcccactcatc |
16501902 |
T |
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| Q |
147 |
ctcgacgatctgatcagaatatgaatcaacctcgtccc |
184 |
Q |
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| T |
16501903 |
ctccacgatttgatcaaaataggaatcaacttcgtccc |
16501940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 23723477 - 23723542
Alignment:
| Q |
71 |
aagggtcatattatttcaaattgttgtcgatattgtatgacagtcggacacttgattcataattgt |
136 |
Q |
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| T |
23723477 |
aagggtcatatttcttcaaattgttgccaatattgtaagacagtcggacacttgattcaaaattgt |
23723542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 24433048 - 24432975
Alignment:
| Q |
119 |
cacttgattcataattgtttcactcgtcctcgacgatctgatcagaatatgaatcaacctcgtcccaattcttc |
192 |
Q |
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| T |
24433048 |
cacttgattcaaaattgccccactcgtcctccacgacctaatcagaacaagaatcaacctcgtcctaattcttc |
24432975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 24430928 - 24431001
Alignment:
| Q |
119 |
cacttgattcataattgtttcactcgtcctcgacgatctgatcagaatatgaatcaacctcgtcccaattcttc |
192 |
Q |
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| T |
24430928 |
cacttgattcaaaattgccccactcttcctccacgacctaatcagaacaagaatcaacctcgtcctaattcttc |
24431001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 24658228 - 24658279
Alignment:
| Q |
85 |
ttcaaattgttgtcgatattgtatgacagtcggacacttgattcataattgt |
136 |
Q |
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| T |
24658228 |
ttcaaattgttgtcgatattgtaagacagttgggcacttgattcaaaattgt |
24658279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 17452097 - 17452024
Alignment:
| Q |
119 |
cacttgattcataattgtttcactcgtcctcgacgatctgatcagaatatgaatcaacctcgtcccaattcttc |
192 |
Q |
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| T |
17452097 |
cacttgattcaaaattgccccactcgtcctccacgacctaatcagaacaagaatcaacctcgtcctaattcttc |
17452024 |
T |
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