View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_54 (Length: 415)

Name: NF10481A_low_54
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_54
NF10481A_low_54
[»] scaffold0147 (1 HSPs)
scaffold0147 (1-415)||(2639-3051)
[»] chr4 (4 HSPs)
chr4 (1-415)||(3451858-3452270)
chr4 (162-212)||(25571299-25571349)
chr4 (155-196)||(22684518-22684559)
chr4 (148-184)||(31038876-31038912)
[»] chr8 (5 HSPs)
chr8 (150-210)||(24326060-24326118)
chr8 (161-210)||(5088890-5088939)
chr8 (150-210)||(30259141-30259201)
chr8 (161-209)||(8062367-8062415)
chr8 (162-210)||(11569440-11569488)
[»] chr5 (4 HSPs)
chr5 (149-218)||(10280574-10280642)
chr5 (161-210)||(6109521-6109570)
chr5 (162-207)||(8177518-8177563)
chr5 (150-199)||(28409359-28409408)
[»] chr3 (6 HSPs)
chr3 (162-214)||(41724251-41724303)
chr3 (162-210)||(34382981-34383029)
chr3 (150-210)||(37273161-37273221)
chr3 (150-210)||(43875492-43875552)
chr3 (166-210)||(44747157-44747201)
chr3 (156-204)||(49586925-49586973)
[»] chr1 (5 HSPs)
chr1 (148-184)||(15558242-15558278)
chr1 (161-195)||(6659552-6659586)
chr1 (162-212)||(28689433-28689483)
chr1 (161-206)||(29007703-29007748)
chr1 (148-184)||(47885042-47885078)
[»] chr7 (4 HSPs)
chr7 (161-196)||(39281007-39281042)
chr7 (163-210)||(39566190-39566237)
chr7 (161-207)||(39345509-39345555)
chr7 (161-209)||(9423578-9423626)
[»] chr6 (3 HSPs)
chr6 (165-210)||(32386089-32386134)
chr6 (161-210)||(34939551-34939600)
chr6 (150-182)||(738550-738582)


Alignment Details
Target: scaffold0147 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 2639 - 3051
Alignment:
Q  1 ctgaagtcatgttgttaagttgattttgttttagatttaggtaatgtttggataaacagtttgattaagcacatttactttaagcgattttgtttatgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2639 ctgaagtcatgttgttaagttgattttgttttagatttaggtaatgtttggataaacagtttgattaagcacatttactttaagcgattttgtttatgta 2738  T
Q  101 tacgttatttcaataaaattattttcaatatatatgctatactatattagagaacttaaagaaataagctgaaaacaacttatggacgtattataaactg 200  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2739 tacgttatttcaataaaattattttcaatat--atgctatactatattagagaacttaaagaaataagctgaaaacaacttatggacgtattataaactg 2836  T
Q  201 tttccataagttttttcatatactctcagagttgcttatccattagatacactcaaataaatcaatccaaatagatacttagtgtttggtgtgtatttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2837 tttccataagttttttcatatactctcagagttgcttatccattagataaactcaaataaatcaatccaaatagatacttaatgtttggtgtgtatttct 2936  T
Q  301 gatgtttaccttttctctatggtatagttgagtcagcacaattagacctcatttatgttttgaaactaaactattgattttaattgggtttgcatcaggg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2937 gatgtttaccttttctctatggtatagttgagtcagcacaattagacctcatttatgttttgaaactaaactattgattttaattgggtttgcatcaggg 3036  T
Q  401 atgtgatgcttctat 415  Q
    |||||||||||||||    
T  3037 atgtgatgcttctat 3051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 3451858 - 3452270
Alignment:
Q  1 ctgaagtcatgttgttaagttgattttgttttagatttaggtaatgtttggataaacagtttgattaagcacatttactttaagcgattttgtttatgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3451858 ctgaagtcatgttgttaagttgattttgttttagatttaggtaatgtttggataaacagtttgattaagcacatttactttaagcgattttgtttatgta 3451957  T
Q  101 tacgttatttcaataaaattattttcaatatatatgctatactatattagagaacttaaagaaataagctgaaaacaacttatggacgtattataaactg 200  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3451958 tacgttatttcaataaaattattttcaatat--atgctatactatattagagaacttaaagaaataagctgaaaacaacttatggacgtattataaactg 3452055  T
Q  201 tttccataagttttttcatatactctcagagttgcttatccattagatacactcaaataaatcaatccaaatagatacttagtgtttggtgtgtatttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3452056 tttccataagttttttcatatactctcagagttgcttatccattagataaactcaaataaatcaatccaaatagatacttaatgtttggtgtgtatttct 3452155  T
Q  301 gatgtttaccttttctctatggtatagttgagtcagcacaattagacctcatttatgttttgaaactaaactattgattttaattgggtttgcatcaggg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452156 gatgtttaccttttctctatggtatagttgagtcagcacaattagacctcatttatgttttgaaactaaactattgattttaattgggtttgcatcaggg 3452255  T
Q  401 atgtgatgcttctat 415  Q
    |||||||||||||||    
T  3452256 atgtgatgcttctat 3452270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 25571299 - 25571349
Alignment:
Q  162 aaataagctgaaaacaacttatggacgtattataaactgtttccataagtt 212  Q
    |||||||||||||||| |||||| || ||| ||||||||||||||||||||    
T  25571299 aaataagctgaaaacagcttatgaacatatcataaactgtttccataagtt 25571349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 22684559 - 22684518
Alignment:
Q  155 cttaaagaaataagctgaaaacaacttatggacgtattataa 196  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||    
T  22684559 cttaaagaaataagctgaaaacagcttatggacatatcataa 22684518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 31038912 - 31038876
Alignment:
Q  148 tagagaacttaaagaaataagctgaaaacaacttatg 184  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  31038912 tagagaacttatagaaataagttgaaaacaacttatg 31038876  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 24326060 - 24326118
Alignment:
Q  150 gagaacttaaagaaataagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    |||||||||||||||||||| |||||||||||||| |  ||| ||||||||||||||||||    
T  24326060 gagaacttaaagaaataagcggaaaacaacttatgta--tatcataaactgtttccataag 24326118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 5088890 - 5088939
Alignment:
Q  161 gaaataagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    |||||||| |||||||| ||||||||| | ||||||||||||||||||||    
T  5088890 gaaataagttgaaaacagcttatggacatgttataaactgtttccataag 5088939  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 30259141 - 30259201
Alignment:
Q  150 gagaacttaaagaaataagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    |||||||||  ||||||| ||||||||||||||| ||| ||| |||| |||||||||||||    
T  30259141 gagaacttatggaaataaactgaaaacaacttatagacatatcataagctgtttccataag 30259201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 8062367 - 8062415
Alignment:
Q  161 gaaataagctgaaaacaacttatggacgtattataaactgtttccataa 209  Q
    ||||||||||||||||| |||||||||   || ||||||||||||||||    
T  8062367 gaaataagctgaaaacatcttatggacacgttgtaaactgtttccataa 8062415  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 11569488 - 11569440
Alignment:
Q  162 aaataagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    ||||||||||||||||||||||| || | | |||| |||||||||||||    
T  11569488 aaataagctgaaaacaacttatgtacatgtcataagctgtttccataag 11569440  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 10280642 - 10280574
Alignment:
Q  149 agagaacttaaagaaataagctgaaaacaacttatggacgtattataaactgtttccataagttttttca 218  Q
    ||||||||||  |||||||||||| |||||||||||||| | | |||| ||||||||||||||| |||||    
T  10280642 agagaacttatggaaataagctgataacaacttatggacat-tcataagctgtttccataagttctttca 10280574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 6109521 - 6109570
Alignment:
Q  161 gaaataagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    ||||||||||||||||||||||||||| ||| ||||  | ||||||||||    
T  6109521 gaaataagctgaaaacaacttatggacatatcataatttttttccataag 6109570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 8177563 - 8177518
Alignment:
Q  162 aaataagctgaaaacaacttatggacgtattataaactgtttccat 207  Q
    |||||| ||||||||||||||||||| ||| |||| ||||||||||    
T  8177563 aaataacctgaaaacaacttatggacatatcataagctgtttccat 8177518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 28409408 - 28409359
Alignment:
Q  150 gagaacttaaagaaataagctgaaaacaacttatggacgtattataaact 199  Q
    ||||||||  |||||||||||||||| ||||||||||| | |||||||||    
T  28409408 gagaacttgtagaaataagctgaaaataacttatggacatgttataaact 28409359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 41724251 - 41724303
Alignment:
Q  162 aaataagctgaaaacaacttatggacgtattataaactgtttccataagtttt 214  Q
    |||||||||||||||||||||||||| | | ||||  ||||||||||||||||    
T  41724251 aaataagctgaaaacaacttatggacatgtcataagttgtttccataagtttt 41724303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 34382981 - 34383029
Alignment:
Q  162 aaataagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    ||||||| |||||||||||||| ||| ||| |||| |||||||||||||    
T  34382981 aaataagatgaaaacaacttatagacatatcataatctgtttccataag 34383029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 37273161 - 37273221
Alignment:
Q  150 gagaacttaaagaaataagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    |||||||||  |||||||| |||||||||||||||||| | | ||||  ||||||||||||    
T  37273161 gagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataag 37273221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 43875492 - 43875552
Alignment:
Q  150 gagaacttaaagaaataagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    |||||||||  ||||||| | ||||||||||||||||||||| ||||  |||||| |||||    
T  43875492 gagaacttatggaaataatcagaaaacaacttatggacgtatcataagttgtttctataag 43875552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 44747201 - 44747157
Alignment:
Q  166 aagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    ||||||||||||||||||| || | | ||||||||||||||||||    
T  44747201 aagctgaaaacaacttatgaacatgtcataaactgtttccataag 44747157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 49586973 - 49586925
Alignment:
Q  156 ttaaagaaataagctgaaaacaacttatggacgtattataaactgtttc 204  Q
    |||||||||||| ||||||||||||||||||  | | ||||||||||||    
T  49586973 ttaaagaaataaactgaaaacaacttatggatatgtcataaactgtttc 49586925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 15558242 - 15558278
Alignment:
Q  148 tagagaacttaaagaaataagctgaaaacaacttatg 184  Q
    ||||||||||| |||||||||||||||||||||||||    
T  15558242 tagagaacttatagaaataagctgaaaacaacttatg 15558278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 6659552 - 6659586
Alignment:
Q  161 gaaataagctgaaaacaacttatggacgtattata 195  Q
    ||||||||||||||||||||||||||| |||||||    
T  6659552 gaaataagctgaaaacaacttatggacatattata 6659586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 28689483 - 28689433
Alignment:
Q  162 aaataagctgaaaacaacttatggacgtattataaactgtttccataagtt 212  Q
    |||||||||||||||||||||||||| | | |||| |||||||| ||||||    
T  28689483 aaataagctgaaaacaacttatggacatgtcataagctgtttccgtaagtt 28689433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 29007748 - 29007703
Alignment:
Q  161 gaaataagctgaaaacaacttatggacgtattataaactgtttcca 206  Q
    |||||||||||||||||||||||| || ||| ||||| ||||||||    
T  29007748 gaaataagctgaaaacaacttatgaacatatcataaattgtttcca 29007703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 47885078 - 47885042
Alignment:
Q  148 tagagaacttaaagaaataagctgaaaacaacttatg 184  Q
    |||||||||||  ||||||||||||||||||||||||    
T  47885078 tagagaacttatggaaataagctgaaaacaacttatg 47885042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 39281007 - 39281042
Alignment:
Q  161 gaaataagctgaaaacaacttatggacgtattataa 196  Q
    ||||||||||||||||||||||||||| ||||||||    
T  39281007 gaaataagctgaaaacaacttatggacatattataa 39281042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 39566237 - 39566190
Alignment:
Q  163 aataagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    ||||||||||||||||||||||||| | | ||||| ||||||||||||    
T  39566237 aataagctgaaaacaacttatggacatgtgataaaatgtttccataag 39566190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 39345509 - 39345555
Alignment:
Q  161 gaaataagctgaaaacaacttatggacgtattataaactgtttccat 207  Q
    |||||||||||||| |||||||||||| | | |||||||||||||||    
T  39345509 gaaataagctgaaagcaacttatggacatgtcataaactgtttccat 39345555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 9423626 - 9423578
Alignment:
Q  161 gaaataagctgaaaacaacttatggacgtattataaactgtttccataa 209  Q
    |||||||||||||||||||||||| || | | ||||| |||||||||||    
T  9423626 gaaataagctgaaaacaacttatgaacatgtcataaattgtttccataa 9423578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 32386134 - 32386089
Alignment:
Q  165 taagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    ||||||||||||||||||||||| | || ||| |||||||||||||    
T  32386134 taagctgaaaacaacttatggacatgttgtaagctgtttccataag 32386089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 34939551 - 34939600
Alignment:
Q  161 gaaataagctgaaaacaacttatggacgtattataaactgtttccataag 210  Q
    |||||||||||||||||||||| |||||| | ||||  ||||||||||||    
T  34939551 gaaataagctgaaaacaacttacggacgtgtcataagttgtttccataag 34939600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 738582 - 738550
Alignment:
Q  150 gagaacttaaagaaataagctgaaaacaactta 182  Q
    ||||||||| |||||||||||||||||||||||    
T  738582 gagaacttatagaaataagctgaaaacaactta 738550  T

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