View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_55 (Length: 415)
Name: NF10481A_low_55
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_55 |
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| [»] scaffold0771 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 3 - 409
Target Start/End: Original strand, 20900243 - 20900655
Alignment:
| Q |
3 |
gaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttcta |
102 |
Q |
| |
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||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
20900243 |
gaaggtatgactgttagcggcagtactgaagttttaaagccatgtcattacctattacaaaagctttgatacctgtttttatttctaacacgttcttcta |
20900342 |
T |
|
| Q |
103 |
atattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgatgtgaaa |
197 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20900343 |
atatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctgtgaaa |
20900442 |
T |
|
| Q |
198 |
caagcagctctctttgatgaggatttggcagtgtaagtctatataactatttttgta-cggacttggactttcgccttaaaaccgtctcatttcattgtc |
296 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||||||| |
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| T |
20900443 |
caagcacctctctttgatgaggatttgacagtgtaagtctatataaccatttttgtaacagacttggattttcgccttaaaaccgtctcatttcattgtc |
20900542 |
T |
|
| Q |
297 |
gttttacatttattttagggagggcatccttgatgcatttgaggacattcagccagttgagctttttggacagctgtttgtttcactagtaagttctctc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20900543 |
gttttacatttattttagggagggcatccttgatgcatttaaggacattcagccagttgagctttttggacagctgtttgtttcactagtaagttctctc |
20900642 |
T |
|
| Q |
397 |
tattagttatttt |
409 |
Q |
| |
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|||| |||||||| |
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| T |
20900643 |
tatttgttatttt |
20900655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 13950011 - 13950191
Alignment:
| Q |
3 |
gaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttcta |
102 |
Q |
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|||||||||| ||||| ||||||||| ||| | | ||||||||||| ||| ||||||||||||||||| ||| |||||||||||| |||||||||||| |
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| T |
13950011 |
gaaggtatgcttgtcaatggcagtaccaaaggtctgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttcttcta |
13950110 |
T |
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| Q |
103 |
atattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
178 |
Q |
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| T |
13950111 |
atatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaa |
13950191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 13950199 - 13950238
Alignment:
| Q |
139 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
178 |
Q |
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| T |
13950199 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
13950238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 2151 - 2331
Alignment:
| Q |
3 |
gaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttcta |
102 |
Q |
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|||||||||| ||||| ||||||||| ||| | | ||||||||||| ||| ||||||||||||||||| ||| |||||||||||| |||||||||||| |
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| T |
2151 |
gaaggtatgcttgtcaatggcagtaccaaaggtctgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttcttcta |
2250 |
T |
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| Q |
103 |
atattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
178 |
Q |
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| T |
2251 |
atatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaa |
2331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 2339 - 2378
Alignment:
| Q |
139 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2339 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
2378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 40702180 - 40702279
Alignment:
| Q |
136 |
tgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgatgtgaaacaagcagctctctttgatgaggatttggcagtgtaagt |
235 |
Q |
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| T |
40702180 |
tgatgataggtaatttatggcatgaattgtgggcaacatctaaaccagtaccagctgttaagcaggcacctcttttcgatgaggatttggcagtgtaagt |
40702279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 40702333 - 40702429
Alignment:
| Q |
298 |
ttttacatttattt-tagggagggcatccttgatgcatttgaggacattcagccagttgagctttttggacagctgtttgtttcactagtaagttct |
393 |
Q |
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| T |
40702333 |
ttttacattcatttgtagagagggcatcctccatgcatttgaggacatccacccttttgagctttttggacagttgtttgtctctttagtaagttct |
40702429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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