View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_554 (Length: 230)
Name: NF10481A_low_554
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_554 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 49375604 - 49375829
Alignment:
| Q |
1 |
tttgaaagagccctaaaatttctttctcatcccataccaagcaacgtgtgttttgctcatctcacactgcattttctaaagtttaaacaacacagagtgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
49375604 |
tttgaaagagccctaaaatttctttctcatcccataccaagcaacgtgtgttttgctcatctcacactgcattttctaaactttaaacaatacagagtgc |
49375703 |
T |
|
| Q |
101 |
acgttcaaggcaaaaccacacaacttctcttttaccttaattaaagttttaacatgtcatttaacttc--nnnnnnncccaaattagtcatttatcttga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
49375704 |
acgttcaaggcaaaaccacacaacttctcttttaccttaattaaagttttaacatgtcatttaacttcttcttttttcccaaattagtcatttatctt-a |
49375802 |
T |
|
| Q |
199 |
aaaaatatttaactgcttattcaactt |
225 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
49375803 |
aaaaatatttaactgcttattcaactt |
49375829 |
T |
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