View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_570 (Length: 230)
Name: NF10481A_low_570
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_570 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5957501 - 5957730
Alignment:
| Q |
1 |
gggatgtacatgtacctccaaagccattttacaattaataatgatagtgatatgtaacacgtgtcgaagggcctcatttggcttaaactcgattaataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5957501 |
gggatgtacatgtacctccaaagccattttacaattaataatgatagtgatatgtaacacgtgtcgaagggcctcatttggcttaaactcgattaataat |
5957600 |
T |
|
| Q |
101 |
tggatttaattgccattataatttccatgcttctgtgtttacattcttctccaactgatttttcttttccactttatcagggttttacacttgaagatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5957601 |
tggatttaattgccattataatttccatgcttctgtgtttacattcttttccaactgatttttcttttccactttatcagggttttacacttgaagatgc |
5957700 |
T |
|
| Q |
201 |
cacagggttggcagttaaaggagaccttga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5957701 |
cacagggttggcagttaaaggagaccttga |
5957730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University