View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_578 (Length: 230)
Name: NF10481A_low_578
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_578 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 107261 - 107480
Alignment:
| Q |
11 |
tgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatgatgtcaaagaccctcaggctgagttgattgatcctgcactcaacgggact |
110 |
Q |
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| T |
107261 |
tgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatcatgtcaaagaccctcaggctgagttgattgatcctgcactcaacgggact |
107360 |
T |
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| Q |
111 |
ctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactc |
210 |
Q |
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| T |
107361 |
ctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactc |
107460 |
T |
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| Q |
211 |
ctgatgttgttgttgatgaa |
230 |
Q |
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| T |
107461 |
ctgatgttgttgttgatgaa |
107480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 87894 - 88115
Alignment:
| Q |
8 |
tgttgttcaaggctgtcatggtgtgtttcacactgcatctcccttctatcatgatgtcaaagaccctcaggctgagttgattgatcctgcactcaacggg |
107 |
Q |
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| T |
87894 |
tgttgttcaaggctgtcatggtgtctttcacactgcatctcccttttatcatgatgtcaaggatcctcaggctgaattgattgatcctgctctcaaaggg |
87993 |
T |
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| Q |
108 |
actctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaa |
207 |
Q |
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| T |
87994 |
actctcaatgttctcaactcatgtgctaaatccccatcactcaaacgtgttgttttaacttcttctattgctgctgttgcttataatgggaagcctcgaa |
88093 |
T |
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| Q |
208 |
ctcctgatgttgttgttgatga |
229 |
Q |
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| T |
88094 |
ctcctgatgttgttgttgatga |
88115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 2707050 - 2707175
Alignment:
| Q |
105 |
gggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctc |
204 |
Q |
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| T |
2707050 |
gggactctaaatgtgctgaaatcatgtgcaaaatttccatctctgaaacgtgttgtattaacctcttctatcgctgcggttgcgtacaataaaaagcctc |
2707149 |
T |
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| Q |
205 |
gaactcctgatgttgttgttgatgaa |
230 |
Q |
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| T |
2707150 |
aaactctcgatgtagttgtcgatgaa |
2707175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 44784893 - 44784747
Alignment:
| Q |
83 |
gttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgct |
182 |
Q |
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| T |
44784893 |
gttgattgatcctgcgctcaaagggactctcaatgttctcaactcatgtgcaaaatccccatcactcaaacgtgttgtcttaacatcttctgtcgctgct |
44784794 |
T |
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| Q |
183 |
gttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatga |
229 |
Q |
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| T |
44784793 |
gttgcatacaatggaaagcctcgaactcctgatgttgttgttgatga |
44784747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 25934237 - 25934307
Alignment:
| Q |
74 |
tcaggctgagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccat |
144 |
Q |
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| T |
25934237 |
tcaggctgagttgattgatccggcactgaagggaactcttaatgttcttcaatcatgtgcaaaatcaccat |
25934307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 26101881 - 26101933
Alignment:
| Q |
81 |
gagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgc |
133 |
Q |
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| T |
26101881 |
gagttgattgatccggcacttaagggaactcttaatgttcttaaatcatgtgc |
26101933 |
T |
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