View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_582 (Length: 230)
Name: NF10481A_low_582
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_582 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11439847 - 11439618
Alignment:
| Q |
1 |
tgtcttgaataagactctaatatggactatatattnnnnnnnnnttgcatgacttttgtgttccccgactcaaataatattgtctagagtatctcatgca |
100 |
Q |
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| T |
11439847 |
tgtctcgaataagactctaatatggactatatattaaaaaaaaattgcatgacttttgtgttccccgactcaaataatattgtctagagtatctcatgca |
11439748 |
T |
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| Q |
101 |
taaaataatggttcaataaaataaacatatcaatgtcatttattttacatgcacaaagtaagtatagtccattcaatgnnnnnnnnnnnnntaagtatag |
200 |
Q |
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| T |
11439747 |
taaaataatggttcaataaaataaacatatcaatgtcatttattttacatgcacaaagtaagtatagtccattcaatgaaaaataaaaaaataagtatag |
11439648 |
T |
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| Q |
201 |
tccaaagtctatgagatattttatcattga |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11439647 |
tccaaagtctatgagatattttatcattga |
11439618 |
T |
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