View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_59 (Length: 408)

Name: NF10481A_low_59
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_59
NF10481A_low_59
[»] chr6 (3 HSPs)
chr6 (27-408)||(663614-664000)
chr6 (188-408)||(908100-908320)
chr6 (190-234)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (83-146)||(44172881-44172944)
chr7 (79-153)||(36314611-36314685)
chr7 (63-129)||(38134414-38134480)
chr7 (189-237)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (189-240)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (67-140)||(16315862-16315935)
chr5 (92-140)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (78-146)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (78-140)||(18513238-18513300)
chr4 (70-119)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (64-129)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (69-146)||(43328458-43328535)
chr1 (192-240)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 27 - 408
Target Start/End: Complemental strand, 664000 - 663614
Alignment:
Q  27 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664000 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 663901  T
Q  127 tgttagtgttgtgtt-----agtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 221  Q
    |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663900 tgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 663801  T
Q  222 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattttatatacgaacagttttta 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||    
T  663800 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattatatatatgaacaattttta 663701  T
Q  322 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgca 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663700 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgca 663614  T

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Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 188 - 408
Target Start/End: Original strand, 908100 - 908320
Alignment:
Q  188 tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttg 287  Q
    |||||||||||||| || |||||||||||| | |||||| ||||||||||||| ||||||||| || | ||||||||||||||||||||||| |||||||    
T  908100 tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacctttgataagtagtgttg 908199  T
Q  288 gtgctacaaagattttatatacgaacagtttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaa 387  Q
    |||||||||||||| ||||||  ||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  908200 gtgctacaaagattatatatatcaacaaattttatggtttatgatttacttatgtgaaattttgcctcttttgataccagagaaagcgagaatttgtgaa 908299  T
Q  388 tggagttcgcataataatgca 408  Q
    ||||||| |||||||||||||    
T  908300 tggagtttgcataataatgca 908320  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  190 taatttgagaaaaagacatatttcaatgaaattacatgtgtcggt 234  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 44172944 - 44172881
Alignment:
Q  83 tgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 146  Q
    |||| |||||||||||| ||| |||| |||||||||| |||||||||| |||||||||| ||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt 44172881  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 36314685 - 36314611
Alignment:
Q  79 acactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgttagacac 153  Q
    ||||| || |||||||||||| ||| ||||||||||||||| || ||||||| ||||||| || ||||| |||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgtcttggtgttggacac 36314611  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 38134480 - 38134414
Alignment:
Q  63 ggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 129  Q
    |||||| ||||||||||||| ||| |||||||||||| ||| |||| |||||||||| || ||||||    
T  38134480 ggacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 36314676 - 36314628
Alignment:
Q  189 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgtt 237  Q
    |||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  36314676 ataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgtt 36314628  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
Q  189 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 240  Q
    ||||||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga 44605137  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 16315862 - 16315935
Alignment:
Q  67 attgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 140  Q
    |||||||||||||||||||| |||||||||| | |||  ||| || ||||||||||||||| |  |||||||||    
T  16315862 attgacatgttgacactgataataatttgaggaaatgatataattgaatgtaaccacatgtatctgtgttgtgt 16315935  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 19625976 - 19625928
Alignment:
Q  92 tttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 140  Q
    |||||||| |||| ||| || ||||||||||||||||| ||||||||||    
T  19625976 tttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgt 19625928  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 8039206 - 8039274
Alignment:
Q  78 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 146  Q
    |||||||||||||||||||||| |||||||  |||||||||| || | ||||  ||||||||| |||||    
T  8039206 gacactgatgataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtgttgtgtcagtgt 8039274  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 18513300 - 18513238
Alignment:
Q  78 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 140  Q
    ||||| ||| |||||||||||| ||| |||| |||||||||| || |||||| ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgt 18513238  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 5654658 - 5654609
Alignment:
Q  70 gacatgttgacactgatgataatttgagaacatggcatatttcaatgtaa 119  Q
    ||||||| ||||||||| |||||||||||| ||| |||| ||||||||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaa 5654609  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 6501481 - 6501546
Alignment:
Q  64 gacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 129  Q
    |||||||||| |||||||||| | |||||||||||  |||  ||| || |||||||||||||||||    
T  6501481 gacattgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt 6501546  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 43328458 - 43328535
Alignment:
Q  69 tgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 146  Q
    ||||| ||||||||| || |||||||||||| |||  ||| || ||||||||||||||||| | ||| ||||| ||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgt 43328535  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 40158456 - 40158408
Alignment:
Q  192 atttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 240  Q
    ||||||||||| ||||||  | |||||||| ||||||||||||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgttaga 40158408  T

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