View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_592 (Length: 229)
Name: NF10481A_low_592
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_592 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 8005965 - 8005776
Alignment:
| Q |
20 |
catcaagtttttacaaaaatctatccnnnnnnnnnataggacaaaaatctatctatattaattatttatttgtggacgagtaacttcttaaaaccaagtt |
119 |
Q |
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| T |
8005965 |
catcaagtttttacaaaaatctatcctttttttt-ataggacaaaaatctatctatattaattatttatttgtggacgagtaacttcttaaaaccaagtt |
8005867 |
T |
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| Q |
120 |
tttgagcagtgaataagaagaactggaaaattaagttggtgatgata-taattgggaataacattagaacgacggagaagtgaattgctcc |
209 |
Q |
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| T |
8005866 |
tctgagcagtgaataagaagaactggaaaattaagttggtggtgaaactaattgggaataacattagaacgacggagaagtgaattgctcc |
8005776 |
T |
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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 9849422 - 9849306
Alignment:
| Q |
72 |
ctatattaattatttatttgtggacgagtaacttcttaaaaccaagtttttgagcagtgaataagaagaactggaaaattaagttggtgatgatataatt |
171 |
Q |
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| T |
9849422 |
ctatattaattatttatttgtggattcgtaactttttaaaaccaattttttgagcggtgaataataagaactggaaaattaagttgttggtgaactaatt |
9849323 |
T |
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| Q |
172 |
gggaataacattagaac |
188 |
Q |
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| T |
9849322 |
gggaattacattagaac |
9849306 |
T |
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