View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_6 (Length: 634)
Name: NF10481A_low_6
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 597; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 9 - 613
Target Start/End: Original strand, 340820 - 341424
Alignment:
| Q |
9 |
tggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaacct |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
340820 |
tggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaacct |
340919 |
T |
|
| Q |
109 |
tttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
340920 |
tttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaag |
341019 |
T |
|
| Q |
209 |
agaagataattcacaacaaagttgagaaatcattgattccaatattgaatcatgttctacaacaaaaagggtcggtggtcgatttacaagatgtgttcaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341020 |
agaagataattcacaacaaagttgagaaatcattgattccaatattgaatcatgttctacaacaaaaagggtcggtggtcgatttacaagatgtgttcaa |
341119 |
T |
|
| Q |
309 |
tcgattcacatttgataacatttgtttgataattcttggacatgatccaaattgtctttcaacagatttccccgaagttccatctgagaaggcttttaac |
408 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341120 |
tcgattcacattcgataacatttgtttgataattcttggacatgatccaaattgtctttcaacagatttccccgaagttccatctgagaaggcttttaac |
341219 |
T |
|
| Q |
409 |
caagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagagaagaaaatgacagagg |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
341220 |
caagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagagaagaaaatgactgagg |
341319 |
T |
|
| Q |
509 |
catgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatgctgaaagtga |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341320 |
catgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatgctgaaagtga |
341419 |
T |
|
| Q |
609 |
tgatg |
613 |
Q |
| |
|
||||| |
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|
| T |
341420 |
tgatg |
341424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 613
Target Start/End: Original strand, 336789 - 337386
Alignment:
| Q |
16 |
atcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaaccttttggtt |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||||| ||| |||||||||||| |
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| T |
336789 |
atcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcgtgaaacgttccaaccttttggtt |
336888 |
T |
|
| Q |
116 |
taggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaagat |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
336889 |
taggaattttcactacagattcacatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaaaat |
336988 |
T |
|
| Q |
216 |
aattcacaacaaagttgagaaatcattgattccaatattgaatcatgttctacaacaaaaagggtcggtggtcgatttacaagatgtgttcaatcgattc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
336989 |
cattcacaacaaagttgagaaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcggtggtcgatttacaagacgtgttcaatcgcttc |
337088 |
T |
|
| Q |
316 |
acatttgataacatttgtttgataattcttggacatgatccaaattgtctttcaacagatttccccgaagttccatctgagaaggcttttaaccaagcgg |
415 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||||||||| | |||||||| |||||| | |||||||||||||||||||| | |
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| T |
337089 |
acatttgataacatttgttcaataattcttggacatgaccctaattgtctttccattgatttccctgaagttgtgtgcgagaaggcttttaaccaagctg |
337188 |
T |
|
| Q |
416 |
aagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagagaagaaaatgacagaggcatgcaa |
515 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||| |
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| T |
337189 |
aagaatccatcttctacagacacactgtgccggcttgtgtttggaagttgcaaagttggcttcaaatcggtgaagagaaaaaaatgactgaagcatgcaa |
337288 |
T |
|
| Q |
516 |
ggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatgctgaaagtgatgatg |
613 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||| | ||||| |||||| |
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| T |
337289 |
agtatttgatcaattcctatattcgtgtatagcttcaaaatgcgaagagctaaagaaaaacggtaacaaaaatgaaattaatggtcaaagtaatgatg |
337386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 393 - 613
Target Start/End: Original strand, 332912 - 333132
Alignment:
| Q |
393 |
tgagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagag |
492 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||||||||||||||| |||||| ||||||||| |||| |||||| ||||||||||| || |||||| |
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|
| T |
332912 |
tgagaaggcttttaaccaagctgaagaatgcatcttctatagacacatcgtgcccgtttgtgtttagaagatgcaaaaatggcttcaaattggggaagag |
333011 |
T |
|
| Q |
493 |
aagaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaa |
592 |
Q |
| |
|
|| |||||||| ||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
333012 |
aaaaaaatgaccgaggcatgcaaagtatttgataaattcctattttcgtgtatagcttcaaagcgcgaagagctaaagcaaaattgtaacaaaaatgaaa |
333111 |
T |
|
| Q |
593 |
tcaatgctgaaagtgatgatg |
613 |
Q |
| |
|
|||||| ||||||||| |||| |
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|
| T |
333112 |
tcaatgttgaaagtgacgatg |
333132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 226 - 356
Target Start/End: Original strand, 332085 - 332215
Alignment:
| Q |
226 |
aaagttgagaaatcattgattccaatattgaatcatgttctacaacaaaaagggtcggtggtcgatttacaagatgtgttcaatcgattcacatttgata |
325 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |||| |
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|
| T |
332085 |
aaagttgagaaatcattatttcctttattgaaacatgttcaacaacaaaaagggtcgatggtcgatttacaagatgtattcaatcgcttcacattcgata |
332184 |
T |
|
| Q |
326 |
acatttgtttgataattcttggacatgatcc |
356 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
332185 |
acatttgcttgataattcttggacatgatcc |
332215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 266 - 530
Target Start/End: Complemental strand, 347676 - 347412
Alignment:
| Q |
266 |
tacaacaaaaagggtcggtggtcgatttacaagatgtgttcaatcgattcacatttgataacatttgtttgataattcttggacatgatccaaattgtct |
365 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||| |||||||| |||||||| | |||||||||| || |||||||| |||||| |||||||| |
|
|
| T |
347676 |
tacaacaacaagggtcagtggtggatttacaagatgtcttcaatcgtttcacattcaacaacatttgttccgtagttcttggatgtgatcccaattgtct |
347577 |
T |
|
| Q |
366 |
ttcaacagatttccccgaagttccatctgagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttg |
465 |
Q |
| |
|
||| | ||||| ||||| || | | |||||| |||||||||||| ||||||| ||| ||||||||||| | ||||| | |||||||||||||| |
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|
| T |
347576 |
ttcgattgattttcccgatgtcgcgtgtgagaaagcttttaaccaaattgaagagtgcatattctatagacatatagtgcctaaaagtgtttggaagttg |
347477 |
T |
|
| Q |
466 |
caaagttggcttcaaatcggagaagagaagaaaatgacagaggcatgcaaggtatttgatcaatt |
530 |
Q |
| |
|
|||| ||||||||||| || |||||||| |||||||| | |||||||| |||||||||||||| |
|
|
| T |
347476 |
caaaaatggcttcaaattggtgaagagaaaaaaatgaccaaagcatgcaaagtatttgatcaatt |
347412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 266 - 515
Target Start/End: Complemental strand, 356335 - 356086
Alignment:
| Q |
266 |
tacaacaaaaagggtcggtggtcgatttacaagatgtgttcaatcgattcacatttgataacatttgtttgataattcttggacatgatccaaattgtct |
365 |
Q |
| |
|
|||||||| |||| || ||||| |||||||||||||| |||||||| |||||||| || |||||||||| | |||||||| |||||| |||||||| |
|
|
| T |
356335 |
tacaacaacaaggctcagtggtggatttacaagatgtcttcaatcgtttcacattcgacaacatttgttccgtggttcttggatgtgatcctaattgtct |
356236 |
T |
|
| Q |
366 |
ttcaacagatttccccgaagttccatctgagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttg |
465 |
Q |
| |
|
||| | ||||| ||||| || | | |||||||||||| |||||| |||||| ||| ||||||||||| | ||||| | |||||||||||||| |
|
|
| T |
356235 |
ttccattgattttcccgatgtcgcgtgtgagaaggctttcaaccaaatcgaagagggcatattctatagacataaagtgcctaaaagtgtttggaagttg |
356136 |
T |
|
| Q |
466 |
caaagttggcttcaaatcggagaagagaagaaaatgacagaggcatgcaa |
515 |
Q |
| |
|
|||| ||||||||||| || |||||||| || ||||| |||||||||| |
|
|
| T |
356135 |
caaaaatggcttcaaattggtgaagagaaaaatatgaccaaggcatgcaa |
356086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 266 - 411
Target Start/End: Original strand, 376820 - 376965
Alignment:
| Q |
266 |
tacaacaaaaagggtcggtggtcgatttacaagatgtgttcaatcgattcacatttgataacatttgtttgataattcttggacatgatccaaattgtct |
365 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||| || |||||||| ||||| || ||||| |
|
|
| T |
376820 |
tacaacaacaagggtcagtggttgatttacaagatgtcttcaatcgcttcacatttgataacatttgttctgtagttcttggatgcgatcctaactgtct |
376919 |
T |
|
| Q |
366 |
ttcaacagatttccccgaagttccatctgagaaggcttttaaccaa |
411 |
Q |
| |
|
||| | || ||||| || ||| | | ||||||||||||| ||||| |
|
|
| T |
376920 |
ttccattgacttcccagacgttgcttgtgagaaggcttttgaccaa |
376965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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