View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_600 (Length: 228)
Name: NF10481A_low_600
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_600 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0464 (1 HSPs) |
| |
|
| [»] scaffold0232 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 14962708 - 14962933
Alignment:
| Q |
3 |
ataagactgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaagggagatatgtatgctgttt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14962708 |
ataagactgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaggggagatatgtatgctgttt |
14962807 |
T |
|
| Q |
103 |
cgcataaagatgccaagggaaaatttgtaaatgaatatgcaaggcaaaaagctgtaagtaacaatttcttttctgcacaattgaaaaagaggtcataata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14962808 |
cgcataaagatgccaagggaaaatttgtaaatgaatatgcaaggcaaaaagctgtaagtaacaatttcttttctgcacaattgaaaaagaggtcataata |
14962907 |
T |
|
| Q |
203 |
cctcatagctcgcctaaaatgaaatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14962908 |
cctcatagctcgcctaaaatgaaatg |
14962933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 15333140 - 15333365
Alignment:
| Q |
3 |
ataagactgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaagggagatatgtatgctgttt |
102 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15333140 |
ataagattgtttggaaatgaacgagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaggggagatatgtatgctgttt |
15333239 |
T |
|
| Q |
103 |
cgcataaagatgccaagggaaaatttgtaaatgaatatgcaaggcaaaaagctgtaagtaacaatttcttttctgcacaattgaaaaagaggtcataata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15333240 |
cgcataaagatgccaagggaaaatttgtcaatgaatatgcaaggcaaaaagctgtaagtgacaatttcttttctgcacaattgaaaaagaggtcataata |
15333339 |
T |
|
| Q |
203 |
cctcatagctcgcctaaaatgaaatg |
228 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
15333340 |
cctcatagcttgcctaaaatgaaatg |
15333365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 15422236 - 15422461
Alignment:
| Q |
3 |
ataagactgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaagggagatatgtatgctgttt |
102 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15422236 |
ataagattgtttggaaatgaacgagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaggggagatatgtatgctgttt |
15422335 |
T |
|
| Q |
103 |
cgcataaagatgccaagggaaaatttgtaaatgaatatgcaaggcaaaaagctgtaagtaacaatttcttttctgcacaattgaaaaagaggtcataata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15422336 |
cgcataaagatgccaagggaaaatttgtcaatgaatatgcaaggcaaaaagctgtaagtgacaatttcttttctgcacaattgaaaaagaggtcataata |
15422435 |
T |
|
| Q |
203 |
cctcatagctcgcctaaaatgaaatg |
228 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
15422436 |
cctcatagcttgcctaaaatgaaatg |
15422461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 15513509 - 15513734
Alignment:
| Q |
3 |
ataagactgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaagggagatatgtatgctgttt |
102 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15513509 |
ataagattgtttggaaatgaacgagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaggggagatatgtatgctgttt |
15513608 |
T |
|
| Q |
103 |
cgcataaagatgccaagggaaaatttgtaaatgaatatgcaaggcaaaaagctgtaagtaacaatttcttttctgcacaattgaaaaagaggtcataata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15513609 |
cgcataaagatgccaagggaaaatttgtcaatgaatatgcaaggcaaaaagctgtaagtgacaatttcttttctgcacaattgaaaaagaggtcataata |
15513708 |
T |
|
| Q |
203 |
cctcatagctcgcctaaaatgaaatg |
228 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
15513709 |
cctcatagcttgcctaaaatgaaatg |
15513734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 14980788 - 14980563
Alignment:
| Q |
3 |
ataagactgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaagggagatatgtatgctgttt |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
14980788 |
ataagattgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaggggagatatgtatgttgttt |
14980689 |
T |
|
| Q |
103 |
cgcataaagatgccaagggaaaatttgtaaatgaatatgcaaggcaaaaagctgtaagtaacaatttcttttctgcacaattgaaaaagaggtcataata |
202 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| ||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14980688 |
cgcataaagatggcaagggaaaatttgtcaatgaatatgtaaggcaaaatgttgtaagtgacaatttcttttcttcacaattgaaaaagaggtcataata |
14980589 |
T |
|
| Q |
203 |
cctcatagctcgcctaaaatgaaatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14980588 |
cctcatagctcgcctaaaatgaaatg |
14980563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 21302005 - 21301780
Alignment:
| Q |
3 |
ataagactgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaagggagatatgtatgctgttt |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
21302005 |
ataagattgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaggggagatatgtatgttgttt |
21301906 |
T |
|
| Q |
103 |
cgcataaagatgccaagggaaaatttgtaaatgaatatgcaaggcaaaaagctgtaagtaacaatttcttttctgcacaattgaaaaagaggtcataata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21301905 |
cgcataaagatgccaagggaaaatttgtcaatgaatatgcaagtcaaaaagctgtaagtgacaatttcttttctgcacaattgtaaaagaggtcataata |
21301806 |
T |
|
| Q |
203 |
cctcatagctcgcctaaaatgaaatg |
228 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
21301805 |
cctcatagttcgcctaaaatgaaatg |
21301780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 15612293 - 15612365
Alignment:
| Q |
24 |
caagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaagggagatatgtatg |
96 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||| ||||| || | ||| ||||||| | ||| |||||||||| |
|
|
| T |
15612293 |
caagtagttattatatgttcttgcttgtaggaaatgagagatagacgaaaatatagtaggggtgatatgtatg |
15612365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 48630413 - 48630638
Alignment:
| Q |
3 |
ataagactgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaagggagatatgtatgctgttt |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
48630413 |
ataagattgtttggaaatgaacaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaggggagatatgtatgatgttt |
48630512 |
T |
|
| Q |
103 |
cgcataaagatgccaagggaaaatttgtaaatgaatatgcaaggcaaaaagctgtaagtaacaatttcttttctgcacaattgaaaaagaggtcataata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48630513 |
cgcataaagatgccaagggaaaatttgtcaatgaatatgcaagtcaaaaagctgtaagtgacaatttcttttctgcacaattggaaaagaggtcataata |
48630612 |
T |
|
| Q |
203 |
cctcatagctcgcctaaaatgaaatg |
228 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
48630613 |
cctcatacttcgcctaaaatgaaatg |
48630638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 3108 - 3291
Alignment:
| Q |
44 |
ttacttgtaggaattgagatatggtcgagaatatagcaagggagatatgtatgctgtttcgcataaagatgccaagggaaaatttgtaaatgaatatgca |
143 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||| |
|
|
| T |
3108 |
ttacctgtaggaattgagatatggtctagaatatagcaggggagatatgtatgttgtttcgcataaagatgccaagggaaa-tttgtcaatgaataagca |
3206 |
T |
|
| Q |
144 |
aggcaaaaagctgtaagtaacaatttcttttctgcacaattgaaaaagaggtcataatacctcatagctcgcctaaaatgaaatg |
228 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3207 |
aggggaaaagctgtaagtgacaatttcttttctgcacaattgaaaaagatgtcataatacctcatagctcgcctaaaatgaaatg |
3291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 20054 - 20107
Alignment:
| Q |
23 |
acaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaata |
76 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||| ||| | ||||||||||||| |
|
|
| T |
20054 |
acaagtacttattatatgtggttatttgtaggaagtgaaagatggtcgagaata |
20107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 47913192 - 47913245
Alignment:
| Q |
23 |
acaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaata |
76 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||| ||| | ||||||||||||| |
|
|
| T |
47913192 |
acaagtacttattatatgtggttatttgtaggaagtgaaagatggtcgagaata |
47913245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 27441552 - 27441625
Alignment:
| Q |
23 |
acaagtaattattatatgtgcttacttgtaggaattgagatatggtcgagaatatagcaagggagatatgtatg |
96 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||||| ||||| || | ||| ||||||| | ||| |||||||||| |
|
|
| T |
27441552 |
acaagtagttattatatgttcttgcttgtaggaaatgagagatagacgaaaatatagtaggggtgatatgtatg |
27441625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University