View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_608 (Length: 227)
Name: NF10481A_low_608
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_608 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 33102435 - 33102244
Alignment:
| Q |
36 |
acatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaata |
135 |
Q |
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| T |
33102435 |
acatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaata |
33102336 |
T |
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| Q |
136 |
acaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaatt |
227 |
Q |
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| T |
33102335 |
acaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaatt |
33102244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 184
Target Start/End: Complemental strand, 52716718 - 52716573
Alignment:
| Q |
39 |
tcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataaca |
138 |
Q |
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| T |
52716718 |
tcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaacaaaaacaacataa |
52716619 |
T |
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| Q |
139 |
aagtgtaccaaatgatacactgaagaaccacaacttgaaccataag |
184 |
Q |
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| T |
52716618 |
gagtgtaccaaataacactttgaagaacaacaatttgtaccataag |
52716573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 10838653 - 10838822
Alignment:
| Q |
42 |
gaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaag |
141 |
Q |
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||||| ||||||||||||| || ||||| || ||||| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | || |
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| T |
10838653 |
gaatcgaccttaaaggaaacgatggaagccgcggtttctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagag |
10838752 |
T |
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| Q |
142 |
tgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagc |
211 |
Q |
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| T |
10838753 |
tgtaccaaataatacactgaagaaccacaacttgaaccattaagctacctgaataatcaccatacatagc |
10838822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 34971227 - 34971055
Alignment:
| Q |
36 |
acatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaata |
135 |
Q |
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|||||||||||||| || || || ||||||||| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | |||||| | |
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| T |
34971227 |
acatcagaatcaactttgaatgatataatagaaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaaaacaaca |
34971128 |
T |
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| Q |
136 |
acaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacat |
208 |
Q |
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||| || |||||||||||||| |||||||| || | |||||||||||||||||| |||| ||||||||||| |
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| T |
34971127 |
tcaatgtataccaaatgatacattgaagaacaactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
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