View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_611 (Length: 227)
Name: NF10481A_low_611
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_611 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 12287209 - 12287398
Alignment:
| Q |
18 |
aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgct |
117 |
Q |
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| T |
12287209 |
aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaacgtata-tttgct |
12287307 |
T |
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| Q |
118 |
ttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatct |
210 |
Q |
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| T |
12287308 |
ttttcaaaccaaatttcaaatacactgaaactacacaccaattacactc--tctttctttccctctttctcgtcactttccaaatcaaaatct |
12287398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 12266675 - 12266814
Alignment:
| Q |
69 |
ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt |
168 |
Q |
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| T |
12266675 |
ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactc-g |
12266773 |
T |
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| Q |
169 |
tctttctttccctctttctcctcactttccaaatcaaaatc |
209 |
Q |
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| T |
12266774 |
tatttctctccctctttctcatcactttccatatcaaaatc |
12266814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 12282401 - 12282540
Alignment:
| Q |
69 |
ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt |
168 |
Q |
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| T |
12282401 |
ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactc-g |
12282499 |
T |
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| Q |
169 |
tctttctttccctctttctcctcactttccaaatcaaaatc |
209 |
Q |
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| T |
12282500 |
tatttctctccctctttctcatcactttccatatcaaaatc |
12282540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 12270659 - 12270734
Alignment:
| Q |
113 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
188 |
Q |
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| T |
12270659 |
ttgcttttccaaatcataattcaaatacattgaaccaaccaaccaattacactctttctttcttcccctctttctc |
12270734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 12256650 - 12256725
Alignment:
| Q |
113 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
188 |
Q |
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| T |
12256650 |
ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc |
12256725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 12264042 - 12264117
Alignment:
| Q |
113 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
188 |
Q |
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| T |
12264042 |
ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc |
12264117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 29197446 - 29197518
Alignment:
| Q |
135 |
aaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaa |
207 |
Q |
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| T |
29197446 |
aaatacaccgaaacaacaaaccaattacactctttctttctttccctctttctcaccactttccatatcaaaa |
29197518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 29197351 - 29197413
Alignment:
| Q |
20 |
tatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttataca |
82 |
Q |
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| T |
29197351 |
tatcaaccaaacagcgtattagcggatatatccacggaattgtcttgtgctgcaagtaataca |
29197413 |
T |
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