View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_63 (Length: 405)
Name: NF10481A_low_63
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 41873240 - 41872841
Alignment:
| Q |
1 |
tcacaaagaacgctatagtaaatttaaattcttaccgaaattgcttgctatgtggcaacacctgcttcttcttcctcaacatttcatcttcaatatcatc |
100 |
Q |
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| T |
41873240 |
tcacaaagaacgctatagtaaatttaaattcttaccgaaattgcttgctatgtggcaacacctgcttcttcttcctcaacatttcatcttcaatatcatc |
41873141 |
T |
|
| Q |
101 |
aacattaaacaacaacgaggaatcatatggcagttccatgttcctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactaccaaca |
200 |
Q |
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| T |
41873140 |
aacattaaacaacaacgaggaatcatatggcagttccatgttcctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactaccagca |
41873041 |
T |
|
| Q |
201 |
agtttcttaaaccgatacctctttgttccatataagaacacacaaagagcaacaacaatagcacaaacacacattccataaccccaatctcttccaacat |
300 |
Q |
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| T |
41873040 |
agtttcttaaaccgatacctctttgttccatataagaacacacaaagagcaacaacaatagcacaaacacacattccataaccccaatctcttccaacat |
41872941 |
T |
|
| Q |
301 |
gatcttgaatgtaaacaagaattgtcactgctgttaatgaacctatgcttatgaaaaagaagaaccagttgaagaatttaaccatgtgatattcttcgac |
400 |
Q |
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| T |
41872940 |
gatcttgaatgtaaacaagaattgtcactgctgttaatgaacctatgcttatgaaaaagaagaaccagttgaagaatttaaccatgtgatttttttcgac |
41872841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 319
Target Start/End: Original strand, 3645957 - 3646133
Alignment:
| Q |
143 |
cctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactaccaacaagtttcttaaaccgatacctctttgttccatataagaacaca |
242 |
Q |
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| T |
3645957 |
cctcttcctccaagcggccacaaacactaccgcaatctgagtcaagggactacctaccggtttcttgtaccgatacttacaggttccaaacaaaaacaca |
3646056 |
T |
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| Q |
243 |
caaagagcaacaacaatagcacaaacacacattccataaccccaatctcttccaacatgatcttgaatgtaaacaag |
319 |
Q |
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| T |
3646057 |
acaagtgctagcacaatagaacaagcacatataccataaccccaatctctaccctgatgatcttgtatgtaaacaag |
3646133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 3658391 - 3658451
Alignment:
| Q |
144 |
ctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactaccaacaagtt |
204 |
Q |
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| T |
3658391 |
ctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactaccgacaagtt |
3658451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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