View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_634 (Length: 224)
Name: NF10481A_low_634
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_634 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 12045208 - 12045067
Alignment:
| Q |
77 |
tggacaaatatcaccaaaataaaaattaatagaacaaatgttgtgagtgacaccaacctagatctcaaccaaaaagcacaatagcgttattccgtcacgg |
176 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12045208 |
tggacaaatatcgccaaaataaaaattaatagaacaaatgttgtgagtgacaccaacctagatctcaaccaaaaagcacaatagcgttattccgtcacgg |
12045109 |
T |
|
| Q |
177 |
tggaagtgatttacacctttatcaacctcctcccaagttgta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12045108 |
tggaagtgatttacacctttatcaacctcctcccaagttgta |
12045067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 12045242 - 12045207
Alignment:
| Q |
13 |
gagaagaagcacatgagatgagagggaggaacagtg |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12045242 |
gagaagaagcacatgagatgagagggaggaacagtg |
12045207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University