View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_638 (Length: 224)
Name: NF10481A_low_638
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_638 |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 107689 - 107471
Alignment:
| Q |
3 |
cattagaattttatggactagcgcattggctgaagaagatacatttaagattgaaacactaacttcaaaaacaatttagtccttgctaatgaagatgtta |
102 |
Q |
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| T |
107689 |
cattagaattttatggactagcgcattggctgaagaagatacatttaagattgaaacaccaacttcaaaaacaatttagtccttgctaatgaagatgtta |
107590 |
T |
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| Q |
103 |
tggactaataaattgacaaatttttatgtactttatgattaaattgtgtgattttgtaagtttagggagatacgtttaatttggcacagaaatcagcatc |
202 |
Q |
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| T |
107589 |
tggactaa---attgacaaatttttatgtactttatgattaaattgtgtgattttgtaagtttagggagatacgtttaatttggcacagaaatcagcatc |
107493 |
T |
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| Q |
203 |
agttaaccaagtttcatcaaca |
224 |
Q |
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| T |
107492 |
agtaaaccaagtttcatcaaca |
107471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 88159 - 88107
Alignment:
| Q |
172 |
atacgtttaatttggcacagaaatcagcatcagttaaccaagtttcatcaaca |
224 |
Q |
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| T |
88159 |
atacatttgatttagcacagaaatcagcatctgtaaaccaagtctcatcaaca |
88107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 44784703 - 44784755
Alignment:
| Q |
172 |
atacgtttaatttggcacagaaatcagcatcagttaaccaagtttcatcaaca |
224 |
Q |
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| T |
44784703 |
atacgtttgatttagcacagaaatcagcatcagtaaaccaagtctcatcaaca |
44784755 |
T |
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