View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_64 (Length: 404)
Name: NF10481A_low_64
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 4 - 350
Target Start/End: Complemental strand, 19822384 - 19822038
Alignment:
| Q |
4 |
attaacacaaatcagacaaaaattaatcaaaagcatattttacacatcaaagtcactatttataaaattaattgaagtaaacacgtatgttcttataatn |
103 |
Q |
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| T |
19822384 |
attaacacaaatcagacaaaaattaatcaaaagcatattttacacatcaaagtcactatttataaaattaattgaagtaaacacgtatgttcttataata |
19822285 |
T |
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| Q |
104 |
nnnnnnntgaaataaataaacggttcagaattgtattacccttgcaatcatggatatcccctcattgctataacggttttttcaaattttaaaagagagt |
203 |
Q |
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| T |
19822284 |
aaaaaaatgaaataaataaacggtttagaattgtattacccatgcaatcatggatatcccctcattgctataacggttttttcaaattttaaaagagagt |
19822185 |
T |
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| Q |
204 |
gtaggaaaaagtagaaaccaaataatgcttttcaaattaatccatagctaataaaacctcatccaaatattcttttagtttgaatcagccttttagtttt |
303 |
Q |
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| T |
19822184 |
gtaggaaaaagtagaaaccaaataatgcttttcaaattaatacatagctaataaaacctcatccaaatattcttttagtttgaatcagccttttagtttt |
19822085 |
T |
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| Q |
304 |
atcaatgttttattttgcatttcacacaaagtttagcagaggattgg |
350 |
Q |
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| T |
19822084 |
atcaatgttttattttgcatttcacacaaagtttagcagaggattgg |
19822038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 2973043 - 2972981
Alignment:
| Q |
222 |
caaataatgcttttcaaattaatccatagctaataaaacctcatccaaatattcttttagttt |
284 |
Q |
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| T |
2973043 |
caaataatgcttttcaaattagtccatagctgagaaaaccccatcttaatattgttttggttt |
2972981 |
T |
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