View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_640 (Length: 223)
Name: NF10481A_low_640
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_640 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46240127 - 46239905
Alignment:
| Q |
1 |
acaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
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| T |
46240127 |
acaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagca |
46240028 |
T |
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| Q |
101 |
gcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgataccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46240027 |
gcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacctttggtgataccca |
46239928 |
T |
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| Q |
201 |
ctgcatgattcgtcctcatgtca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
46239927 |
ctgcatgattcgtcctcatgtca |
46239905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 23541436 - 23541299
Alignment:
| Q |
86 |
cttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctac |
185 |
Q |
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||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |
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| T |
23541436 |
cttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctac |
23541337 |
T |
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| Q |
186 |
ctttggtgatacccactgcatgattcgtcctcatgtca |
223 |
Q |
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| T |
23541336 |
ccattgtaatacccactgcatggtttgtcctcatgtca |
23541299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 3437352 - 3437537
Alignment:
| Q |
1 |
acaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3437352 |
acaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagca |
3437451 |
T |
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| Q |
101 |
gcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc |
186 |
Q |
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| T |
3437452 |
gcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc |
3437537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 3437534 - 3437562
Alignment:
| Q |
195 |
tacccactgcatgattcgtcctcatgtca |
223 |
Q |
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| T |
3437534 |
tacccactgcatgattcgtcctcatgtca |
3437562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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