View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_647 (Length: 222)
Name: NF10481A_low_647
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_647 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 29524591 - 29524807
Alignment:
| Q |
2 |
ccaacgcattgtgaagactagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaaaatggaa |
101 |
Q |
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| T |
29524591 |
ccaacgtaatgtggagaatagttggaattgtgtcaagtgtagtaggcctattatgtaatgctcagagccattctttcaatcgtttcattggaaaatggaa |
29524690 |
T |
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| Q |
102 |
cattctaaagttctttttgtattgggtgctttccttggttatctttactaccatgttgtttgtaaagcagttcttaccatccacacgatatggtcatata |
201 |
Q |
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| T |
29524691 |
cactctcaagttctttctgtatggggtgttttccttggttatctttactaccatgttgtttgtaaagccgttctcaacatccacacgatatggtcatata |
29524790 |
T |
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| Q |
202 |
aaaatctacacgagctt |
218 |
Q |
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||| ||||||| |||| |
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| T |
29524791 |
aaaccctacacgggctt |
29524807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 3 - 186
Target Start/End: Original strand, 29612381 - 29612564
Alignment:
| Q |
3 |
caacgcattgtgaagactagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaaaatggaac |
102 |
Q |
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| T |
29612381 |
caacgcattttggagactagttggccttgtgtcaagtgtatttggcctattgtgttatgctcagagcccttctttcaatcgtttaattggaagatggaac |
29612480 |
T |
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| Q |
103 |
attctaaagttctttttgtattgggtgctttccttggttatctttactaccatgttgtttgtaaagcagttcttaccatccaca |
186 |
Q |
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| T |
29612481 |
attgtcaagttctctctgtatggagtgttttccttggctatctttaccaccatattgtttgtaaagcagttctcaccatccaca |
29612564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 29529070 - 29528996
Alignment:
| Q |
20 |
tagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaa |
94 |
Q |
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| T |
29529070 |
tagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaa |
29528996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 29475394 - 29475317
Alignment:
| Q |
20 |
tagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaaaat |
97 |
Q |
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| T |
29475394 |
tagttggccttatgtcaagtatagtcggtctggtttgttatgctctgagcccttctttcaatcgattaattggaaaat |
29475317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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