View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_649 (Length: 222)

Name: NF10481A_low_649
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_649
NF10481A_low_649
[»] chr7 (5 HSPs)
chr7 (169-222)||(7744645-7744698)
chr7 (167-216)||(12543251-12543300)
chr7 (47-92)||(12543375-12543420)
chr7 (47-92)||(7744523-7744568)
chr7 (1-38)||(12543443-12543480)
[»] chr8 (2 HSPs)
chr8 (47-92)||(1080888-1080933)
chr8 (47-92)||(24917462-24917507)
[»] chr5 (2 HSPs)
chr5 (47-87)||(11893748-11893788)
chr5 (47-87)||(28086278-28086318)
[»] chr6 (3 HSPs)
chr6 (47-92)||(15339448-15339493)
chr6 (47-87)||(33846156-33846196)
chr6 (47-87)||(33847182-33847222)
[»] chr3 (1 HSPs)
chr3 (55-92)||(53281561-53281598)
[»] chr2 (1 HSPs)
chr2 (47-87)||(562192-562232)


Alignment Details
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 7744645 - 7744698
Alignment:
Q  169 caccaccactggctgccgctacattcttgcccttcgccccacccctctctttga 222  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7744645 caccaccactggctgccgctgcattcttgcccttcgccccacccctctctttga 7744698  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 12543300 - 12543251
Alignment:
Q  167 gccaccaccactggctgccgctacattcttgcccttcgccccacccctct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543300 gccaccaccactggctgccgctacattcttgcccttcgccccacccctct 12543251  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 12543420 - 12543375
Alignment:
Q  47 atatacaacccttatgtggcatgggtattttggaaatttcaaacag 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12543420 atatacaacccttatgtggcatgggtattttggaaatttcaaacag 12543375  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 7744523 - 7744568
Alignment:
Q  47 atatacaacccttatgtggcatgggtattttggaaatttcaaacag 92  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7744523 atatacaccccttatgtggcatgggtattttggaaatttcacacag 7744568  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12543480 - 12543443
Alignment:
Q  1 aaaatggaagaggcaaaggaaaggaaaatgatccatgt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12543480 aaaatggaagaggcaaaggaaaggaaaatgatccatgt 12543443  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 1080888 - 1080933
Alignment:
Q  47 atatacaacccttatgtggcatgggtattttggaaatttcaaacag 92  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  1080888 atatacaccccttatgtggcatgggtattttggaaatttcacacag 1080933  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 24917462 - 24917507
Alignment:
Q  47 atatacaacccttatgtggcatgggtattttggaaatttcaaacag 92  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  24917462 atatacaccccttatgtggcatgggtattttggaaatttcacacag 24917507  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 11893748 - 11893788
Alignment:
Q  47 atatacaacccttatgtggcatgggtattttggaaatttca 87  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  11893748 atatacaccccttatgtggcatgggtattttggaaatttca 11893788  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 28086318 - 28086278
Alignment:
Q  47 atatacaacccttatgtggcatgggtattttggaaatttca 87  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  28086318 atatacaccccttatgtggcatgggtattttagaaatttca 28086278  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 15339448 - 15339493
Alignment:
Q  47 atatacaacccttatgtggcatgggtattttggaaatttcaaacag 92  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||    
T  15339448 atatacacccgttatgtggcatgggtattttggaaatttcacacag 15339493  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 33846156 - 33846196
Alignment:
Q  47 atatacaacccttatgtggcatgggtattttggaaatttca 87  Q
    ||||||| | ||||||||||||||||||||| |||||||||    
T  33846156 atatacacctcttatgtggcatgggtattttagaaatttca 33846196  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 33847222 - 33847182
Alignment:
Q  47 atatacaacccttatgtggcatgggtattttggaaatttca 87  Q
    ||||||| | ||||||||||||||||||||| |||||||||    
T  33847222 atatacacctcttatgtggcatgggtattttagaaatttca 33847182  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 53281598 - 53281561
Alignment:
Q  55 cccttatgtggcatgggtattttggaaatttcaaacag 92  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  53281598 cccttatgtggcatgggtattttggaaatttcacacag 53281561  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 562192 - 562232
Alignment:
Q  47 atatacaacccttatgtggcatgggtattttggaaatttca 87  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  562192 atatacaccccttatgtggcatgggtattttagaaatttca 562232  T

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