View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_65 (Length: 404)
Name: NF10481A_low_65
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_65 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 5 - 403
Target Start/End: Original strand, 36935841 - 36936246
Alignment:
| Q |
5 |
tattaatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccattttatg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36935841 |
tattaatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccattttatg |
36935940 |
T |
|
| Q |
105 |
atgttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagacaactcctattcatggtgtttaa---- |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36935941 |
atgttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagactactcctattcatggtgtttaatctt |
36936040 |
T |
|
| Q |
201 |
----tcttgctcggttatgaattattttctttggtttttgtatgctcagattgactacaggaagtctcgaaagtgaccattagatggttgtagaagagat |
296 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36936041 |
gcattcttgctcggttatgaatta-tttctttggtttttgtatgctcagattgactacaggtagtctcgaaagtgaccattagatggttttagaagagat |
36936139 |
T |
|
| Q |
297 |
cgaggctggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacacatttagggtttttcgacaaattgaatgcaataacacca |
396 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || |
|
|
| T |
36936140 |
cgaggttggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacatatttagggtttttcgacaaattgaacacaataacaaca |
36936239 |
T |
|
| Q |
397 |
aactcga |
403 |
Q |
| |
|
||||||| |
|
|
| T |
36936240 |
aactcga |
36936246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 36956993 - 36957044
Alignment:
| Q |
303 |
tggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaa |
355 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||||||| || ||||||||| |
|
|
| T |
36956993 |
tggagacatctcgcattagcaatatcctcagg-tgcaatttcagaaggtcaaa |
36957044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University