View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_650 (Length: 222)
Name: NF10481A_low_650
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_650 |
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Alignment Details
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 9611824 - 9611909
Alignment:
| Q |
4 |
ttccatcttttgtaatttgatgatggtataaaataatattgaccaacccaatcatttcactttgttttggaagaaatataaaataatga |
92 |
Q |
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| T |
9611824 |
ttccatcttttgtaatttgat---ggtataaaataatattgaccaacccaatcatttcacttggttttggaagaactataaaataatga |
9611909 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 21237517 - 21237478
Alignment:
| Q |
115 |
cgtcacattctgctcgcttggaatttttacttttgtagtt |
154 |
Q |
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| T |
21237517 |
cgtcacattctgctcgtttggaatttttatttttgtagtt |
21237478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 21237473 - 21237439
Alignment:
| Q |
177 |
tcatgtattacttatattaaaccctactagcgaag |
211 |
Q |
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| T |
21237473 |
tcatgtattacttatattaaaccctactaacgaag |
21237439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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