View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_654 (Length: 221)
Name: NF10481A_low_654
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_654 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29447940 - 29447720
Alignment:
| Q |
1 |
aatatataatgaaacttacttacaaaagcatccttcaaaaatgcgagcgctagagcatgtcatccaaaatatgaaaaccgaagtcatatatatgaacata |
100 |
Q |
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| T |
29447940 |
aatatataatgaaacttacttacaaaagcatccttcaaaaatgcgagcgctagagcatgtcatccaaaatatgaaaaccgaagtcatatatatgaacata |
29447841 |
T |
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| Q |
101 |
agtagacttacagattacagaaaagacggacatccttcagtataccgaaaagattacaagacatcaatgaagcagaactcttcttcgctatacgaagatt |
200 |
Q |
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| T |
29447840 |
agtagacttacagattacagaaaagacggacatccttcagtataccgaaaagattacaagacatcaatgaagcagaactcttcttcgctatacgaagatt |
29447741 |
T |
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| Q |
201 |
gcagccattggtgtttgcctg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
29447740 |
gcagccattggtgtttgcctg |
29447720 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 14584352 - 14584246
Alignment:
| Q |
57 |
atgtcatccaaaatatgaaaaccgaagtcatatatatgaacataagtagacttacagattacagaaaagacggacatccttcagtataccgaaaagatta |
156 |
Q |
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||||||||| ||| |||||||| ||| || ||||||||||||||||| | ||||||||||||||||||| ||||| ||| ||||| ||| || || |
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| T |
14584352 |
atgtcatcccaaagatgaaaactccagttatttatatgaacataagtaggatgacagattacagaaaagacgcccatccatcaatatacagaatggaata |
14584253 |
T |
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| Q |
157 |
caagaca |
163 |
Q |
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||||||| |
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| T |
14584252 |
caagaca |
14584246 |
T |
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