View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_666 (Length: 219)
Name: NF10481A_low_666
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_666 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 14464208 - 14464424
Alignment:
| Q |
3 |
agaaaataaatgaagttggaattccgcttgaggttgcgcaaaggatcacatttgaggaaagagtcagcattcataacatccactatttacagaagttggt |
102 |
Q |
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| T |
14464208 |
agaaaataaatgaagttggaattccgcttgaggttgcccaaaggatcacatttgaggaaagagtcagcattcataacatccactatttacagaagttggt |
14464307 |
T |
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| Q |
103 |
ggatgaaaacttgtgcttgacatacaaggaaggtatgtcaacctactcactgagggagggctcaaaggggcacacttatcttaaacctggtcagatcgtg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14464308 |
ggatgaaaacttgtgcttgacatacaaggaaggtatgtcaacctactcactgagggagggctcaaaggggcacacttatcttaaacctggtcagatagtg |
14464407 |
T |
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| Q |
203 |
caccggaggattatgga |
219 |
Q |
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| T |
14464408 |
caccggaggattatgga |
14464424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 27455860 - 27455645
Alignment:
| Q |
3 |
agaaaataaatgaagttggaattccgcttgaggttgcgcaaaggatcacatttgaggaaagagtcagcattcataacatccactatttacagaagttggt |
102 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
27455860 |
agaaaataaacgaagttggaattccgcttgaggttgcccaaaggatcacatttgaggaaagagtcagcattcttaacatccattatttacagaagttggt |
27455761 |
T |
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| Q |
103 |
ggatgaaaacttgtgcttgacatacaaggaaggtatgtcaacctactcactgagggagggctcaaaggggcacacttatcttaaacctggtcagatcgtg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27455760 |
tgatgaaaacttgtgcttgacatacaaggaaggtatgtcaacttactcgctgagggagggctcaaaggggcacacttatcttaaacctggtcagatagtg |
27455661 |
T |
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| Q |
203 |
caccggaggattatgga |
219 |
Q |
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| T |
27455660 |
ca-cggaggattatgga |
27455645 |
T |
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