View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_667 (Length: 218)

Name: NF10481A_low_667

Description: NF10481A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10481A_low_667

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 152; E-Value: 1e-80

Query Start/End: Original strand, 23 - 206

Target Start/End: Complemental strand, 31998088 - 31997905

Alignment:

Q	23	aaataggtcaaaagaccttgattaacaaaattaaaatccaattcttatgcagagcctgaaagataaacaaaccaactgttaccatgaaatttagcagcta	122	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31998088	aaataggtcaaaagacttcgattaaaaaaattaaaatccaattcttatgcagagccagaaagataaacaaaccaactgtgaccaagaaatttagcagcta	31997989	T

Q	123	atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcatattctt	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	31997988	atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacgtccacgaggcattttctt	31997905	T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 47; E-Value: 5e-18

Query Start/End: Original strand, 115 - 209

Target Start/End: Complemental strand, 15843120 - 15843026

Alignment:

Q	115	agcagctaatatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcatattcttcga	209	Q
		\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|
T	15843120	agcaggtaatgtacttccctccagaggcacattgccccctccaacaagaccatctcctactatgcaagtccacatccacgaggtattttcttcga	15843026	T

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