View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_668 (Length: 218)
Name: NF10481A_low_668
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_668 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 8772468 - 8772664
Alignment:
| Q |
19 |
cagagagaactttccctattgagtcttaaattagctagccaaatattataagacaataggaaactaaatatatcaacagccagcttcaatcagtttgagc |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
8772468 |
cagagagaactttcccaattgagtcttaaattagctagccaaaaattataagacaataggaaactaaatatatcagcagccagattcaactagtttgagc |
8772567 |
T |
|
| Q |
119 |
agagtagaaacaagactgcgatgacggttgttgtccataaccagcaacattcgtgacttgtgctaagaggccaacacaggaagttgatgattcacca |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
8772568 |
agagtagaaacaagactgcgatgactgttgttgtccataaccagcaacattcatgacttgtgccaagagcccaacacaggaagttgatgattcacca |
8772664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 7558236 - 7558040
Alignment:
| Q |
19 |
cagagagaactttccctattgagtcttaaattagctagccaaatattataagacaataggaaactaaatatatcaacagccagcttcaatcagtttgagc |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
7558236 |
cagagagaactttcccaattgagtcttaaattagctagccaaaaattataagacaataggaaactaaatatatcagcagccagattcaactagtttgagc |
7558137 |
T |
|
| Q |
119 |
agagtagaaacaagactgcgatgacggttgttgtccataaccagcaacattcgtgacttgtgctaagaggccaacacaggaagttgatgattcacca |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
7558136 |
agagtagaaacaagactgcgatgactgttgttgtccataaccagcaacattcatgacttgtgccaagagcccaacacaggaagttgatgattcacca |
7558040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 19721963 - 19721767
Alignment:
| Q |
19 |
cagagagaactttccctattgagtcttaaattagctagccaaatattataagacaataggaaactaaatatatcaacagccagcttcaatcagtttgagc |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| |
|
|
| T |
19721963 |
cagagagaacttttcctattgagtcttaaattagctagccaaaaattataagacaataggaaaataaatatatcagcagccagcttcaatcaaattgagc |
19721864 |
T |
|
| Q |
119 |
agagtagaaacaagactgcgatgacggttgttgtccataaccagcaacattcgtgacttgtgctaagaggccaacacaggaagttgatgattcacca |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
19721863 |
agagtagaaacaagactgcgatgattgttgttgtccataaccagcaacattcatgatttatgccaagagcccaacacaggaagttgatgattcacca |
19721767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 35808013 - 35808065
Alignment:
| Q |
64 |
ttataagacaataggaaactaaatatatcaacagccagcttcaatcagtttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
35808013 |
ttataagacaataggaaactaaatatatcagctgccaacttcaatcagtttga |
35808065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University