View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_671 (Length: 216)
Name: NF10481A_low_671
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_671 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 31824841 - 31824748
Alignment:
| Q |
105 |
tcaagaaagagtccaagttttttatttggattgttttgcatgaatgatcgatgacctattttcagaaaagcaaattgagaattgggagtccatg |
198 |
Q |
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| T |
31824841 |
tcaagaaagagtccaagttttttatttggattgttttgcatgaatgatcaatgacctattttcagaaaagcaaattgagaattgggagtccatg |
31824748 |
T |
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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 5244945 - 5244761
Alignment:
| Q |
4 |
atgaacggtgaattcacagtttctgcaacttaccatttgctacgcagtaccagttacatcaataatcatgagatttggaatcaaatttggcagctgcggg |
103 |
Q |
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| T |
5244945 |
atgaaaggtgaagtcatagtttctgcagcttaccagttaccgtatagtaccaatttcatcaataataatgagatttggaatcaaatttggaggttgcggc |
5244846 |
T |
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| Q |
104 |
ttcaagaaagagtccaagttttttatttggattgttttgcatgaatgatcgatgacctattttcagaaaagcaaattgagaattgg |
189 |
Q |
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| T |
5244845 |
tgcaagaaaga-ttcaagttttttatttggattgttttgcacgaaagattaatgaccaatttccaaaaaagtaaaatgaaaattgg |
5244761 |
T |
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