View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_672 (Length: 216)
Name: NF10481A_low_672
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_672 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 35653945 - 35654137
Alignment:
| Q |
16 |
ggacatcagttcaaaccacataaggattgccttcattgacctt----------aaattctccacacaaacctcttaaatgaaaaatgtatcatccatata |
105 |
Q |
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| T |
35653945 |
ggacattagttcaaaccacataaggattgccttcactgaccttaaattcccttaaattctccacacaaacctcttaaatgaaaaatgtatcatccgtata |
35654044 |
T |
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| Q |
106 |
ttggaaataggacatcgtctcctctgatacaagtgtttggaacccattgataaaaccaacctccatcctctttagacattagaacaccccacc |
198 |
Q |
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| T |
35654045 |
ttgaaaataggacatcgtctcctccgatacaagtgtttggaacccattgataaaaccaacctccatcctctttagacattagaacaccccacc |
35654137 |
T |
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