View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_675 (Length: 216)
Name: NF10481A_low_675
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_675 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 45181940 - 45182126
Alignment:
| Q |
17 |
ttcgtgttcttcatgtcccctcgcgttatcaaattgcggatatctttaccaaaggtcatcccttagtactcttccaagattttagggatagtctcagcga |
116 |
Q |
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| T |
45181940 |
ttcgtgttcttcatgtcccctcgcgttatcaaattgcggatatctttaccaaaggtcttcccttagtactcttccaagattttagggatagtctcagcgt |
45182039 |
T |
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| Q |
117 |
aggatatcctcccgctaagactacgggggcgtaatagaatatctgttaattaatgtaaatatcattagtctttattattattgatgt |
203 |
Q |
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| T |
45182040 |
aggatatcctcccgctacgactacgggggcgtaatagaatatctgttaattaatgtaaatatcattaatctttatcattattgatgt |
45182126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 45177477 - 45177532
Alignment:
| Q |
148 |
taatagaatatctgttaattaatgtaaatatcattagtctttattattattgatgt |
203 |
Q |
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| T |
45177477 |
taatagaatatctattaattaatgtaaatatcattaatctttatcattattgatgt |
45177532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 9399436 - 9399537
Alignment:
| Q |
58 |
atctttaccaaaggtcatcccttagtactcttccaagattttagggatagtctcagcgaaggatatcctcccgctaagactacgggggcgtaatagaata |
157 |
Q |
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| T |
9399436 |
atctttacctaaggtcttccccttgtactctttcaagattttagggacaatctcaacataggatatcctcccactcagactgcgggagtgtgatagaata |
9399535 |
T |
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| Q |
158 |
tc |
159 |
Q |
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|| |
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| T |
9399536 |
tc |
9399537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 16094977 - 16095047
Alignment:
| Q |
28 |
catgtcccctcgcgttatcaaattgcggatatctttaccaaaggtcatcccttagtactcttccaagattt |
98 |
Q |
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| T |
16094977 |
catgttccctcgcgctatcaaattgcggatatatttaccaagggtcttcccctaatactctttcaagattt |
16095047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 7324358 - 7324263
Alignment:
| Q |
19 |
cgtgttcttcatgtcccctcgcgttatcaaattgcggatatctttaccaaaggtcatcccttagtactcttccaagattttagggatagtctcagc |
114 |
Q |
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| T |
7324358 |
cgtgttctacatgtcccctcacgatatcaaattgccgatattttcacgaaaggccttcccctagtactatttcaagatttcagagacagtctcagc |
7324263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 45242924 - 45242885
Alignment:
| Q |
154 |
aatatctgttaattaatgtaaatatcattagtctttatta |
193 |
Q |
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| T |
45242924 |
aatatatgttaattaatgtaaatatcattagtctttatta |
45242885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 26643658 - 26643564
Alignment:
| Q |
20 |
gtgttcttcatgtcccctcgcgttatcaaattgcggatatctttaccaaaggtcatcccttagtactcttccaagattttagggatagtctcagc |
114 |
Q |
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||||||| ||||||||||| || |||||||||| ||||| || | ||||||| |||| ||||||| || ||||||||||| || ||||||||| |
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| T |
26643658 |
gtgttctacatgtcccctcacgatatcaaattgtcgatattttcgcgaaaggtcttcccctagtactatttcaagattttagagacagtctcagc |
26643564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 26749624 - 26749530
Alignment:
| Q |
20 |
gtgttcttcatgtcccctcgcgttatcaaattgcggatatctttaccaaaggtcatcccttagtactcttccaagattttagggatagtctcagc |
114 |
Q |
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||||||| ||||||||||| || |||||||||| ||||| || | ||||||| |||| ||||||| || ||||||||||| || ||||||||| |
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| T |
26749624 |
gtgttctacatgtcccctcacgatatcaaattgtcgatattttcgcgaaaggtcttcccctagtactatttcaagattttagagacagtctcagc |
26749530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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