View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_676 (Length: 215)
Name: NF10481A_low_676
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_676 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 45643432 - 45643575
Alignment:
| Q |
47 |
tggtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaatcaaggaggctacgagaa |
146 |
Q |
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| T |
45643432 |
tggtttgttgccagagtcggcaatggcatagtgatagctaaaaagaagcataaaaccaaagcattagagaaagccattttaatcaaggaagctacgagga |
45643531 |
T |
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| Q |
147 |
tcttgtttgagaattgagatataatgggttagctttatgtaattgc |
192 |
Q |
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| T |
45643532 |
tcttatttgagaattgag--ataatggtttagctttatgtaattgc |
45643575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 45702898 - 45702816
Alignment:
| Q |
47 |
tggtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaat |
129 |
Q |
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| T |
45702898 |
tggtttgttgccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaat |
45702816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 45886710 - 45886628
Alignment:
| Q |
47 |
tggtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaat |
129 |
Q |
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| T |
45886710 |
tggtttgttgccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaat |
45886628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 45650751 - 45650815
Alignment:
| Q |
53 |
gttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaa |
117 |
Q |
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| T |
45650751 |
gttgcaagagttggcactgccacattgatcactaaaaagaagcctaaaatcaaaggattagagaa |
45650815 |
T |
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