View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_682 (Length: 214)

Name: NF10481A_low_682
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_682
NF10481A_low_682
[»] chr4 (1 HSPs)
chr4 (96-194)||(18334844-18334942)
[»] chr5 (3 HSPs)
chr5 (96-171)||(43000-43075)
chr5 (102-166)||(18151769-18151833)
chr5 (96-169)||(18159245-18159318)
[»] chr8 (3 HSPs)
chr8 (20-97)||(34915897-34915974)
chr8 (37-88)||(34544538-34544589)
chr8 (20-61)||(34538809-34538850)
[»] scaffold0265 (2 HSPs)
scaffold0265 (107-194)||(2385-2472)
scaffold0265 (107-194)||(7274-7361)
[»] chr1 (1 HSPs)
chr1 (107-194)||(21825449-21825536)
[»] scaffold0002 (1 HSPs)
scaffold0002 (96-194)||(270076-270174)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 18334844 - 18334942
Alignment:
Q  96 atagccgttggttggttaggacatcctatctttagagacaaagaggggcgtgaactttttgtacgtcgtatgcctacnnnnnnngaaacatttccggtt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  18334844 atagccgttggttggttaggacatcctatctttagagacaaagaggggcgtgaactttttgtacgtcgtatgcctactttttttgaaacatttccggtt 18334942  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 43000 - 43075
Alignment:
Q  96 atagccgttggttggttaggacatcctatctttagagacaaagaggggcgtgaactttttgtacgtcgtatgccta 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43000 atagccgttggttggttaggacatcctatctttagagacaaagaggggcgtgaactttttgtacgtcgtatgccta 43075  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 18151833 - 18151769
Alignment:
Q  102 gttggttggttaggacatcctatctttagagacaaagaggggcgtgaactttttgtacgtcgtat 166  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  18151833 gttggttggttagaacatcctatctttagagacaaagatgggcgtgaactttatgtacgtcgtat 18151769  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 18159318 - 18159245
Alignment:
Q  96 atagccgttggttggttaggacatcctatctttagagacaaagaggggcgtgaactttttgtacgtcgtatgcc 169  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||  |||||| ||||||||||| ||||||||    
T  18159318 atagtcgttggttggttaggacatcctatctttaaagacaaagagaagcgtgagctttttgtacgacgtatgcc 18159245  T

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Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 34915974 - 34915897
Alignment:
Q  20 taattttcaacttagcgtcatgtaagttatttgatctttaatagtattatggaaaactggtataatattcatggttat 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34915974 taattttcaacttagcgtcatgtaagttatttgatctttaatagtattatggaaaactggtatgatattcatggttat 34915897  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 34544589 - 34544538
Alignment:
Q  37 tcatgtaagttatttgatctttaatagtattatggaaaactggtataatatt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34544589 tcatgtaagttatttgatctttaatagtattatggaaaactggtatattatt 34544538  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 34538850 - 34538809
Alignment:
Q  20 taattttcaacttagcgtcatgtaagttatttgatctttaat 61  Q
    ||||||||||| |||| ||||||||||||||| |||||||||    
T  34538850 taattttcaacatagcatcatgtaagttatttcatctttaat 34538809  T

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Target: scaffold0265 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 2472 - 2385
Alignment:
Q  107 ttggttaggacatcctatctttagagacaaagaggggcgtgaactttttgtacgtcgtatgcctacnnnnnnngaaacatttccggtt 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  2472 ttggttaggacatcctatctttagagacaaataggggcgtgaactttttgtacgtcgtatgcctactttttttgaaacatttccggtt 2385  T

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Target: scaffold0265; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 7361 - 7274
Alignment:
Q  107 ttggttaggacatcctatctttagagacaaagaggggcgtgaactttttgtacgtcgtatgcctacnnnnnnngaaacatttccggtt 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  7361 ttggttaggacatcctatctttagagacaaataggggcgtgaactttttgtacgtcgtatgcctactttttttgaaacatttccggtt 7274  T

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Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 21825449 - 21825536
Alignment:
Q  107 ttggttaggacatcctatctttagagacaaagaggggcgtgaactttttgtacgtcgtatgcctacnnnnnnngaaacatttccggtt 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  21825449 ttggttaggacatcctatctttagagacaaataggggcgtgaactttttgtacgtcgtatgcctactttttttgaaacatttccggtt 21825536  T

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Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 270076 - 270174
Alignment:
Q  96 atagccgttggttggttaggacatcctatctttagagacaaagaggggcgtgaactttttgtacgtcgtatgcctacnnnnnnngaaacatttccggtt 194  Q
    ||||| ||||| ||||||||||||||  |||||||||| ||||| || ||||| ||||||||||| |||||||||||       |||||||||||||||    
T  270076 atagctgttggatggttaggacatcccgtctttagagataaagaaggacgtgagctttttgtacgccgtatgcctactttttttgaaacatttccggtt 270174  T

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