View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_685 (Length: 214)
Name: NF10481A_low_685
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_685 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 89 - 214
Target Start/End: Original strand, 7172804 - 7172929
Alignment:
| Q |
89 |
tatatcaaatcttaaggatatagcatccaaatgtgatctcacagcaaggctcatgtctcaagcaaataagtttataataaaatgtgttttcaagcagtga |
188 |
Q |
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| T |
7172804 |
tatatcaaatcttaaggaaatagcatccaaatgtgatctcacagcaaggctcatgtctcaagcaaataagtttataataaaatgtgttttcaagcagtga |
7172903 |
T |
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| Q |
189 |
tcccaactcagcacatacaacttttg |
214 |
Q |
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| T |
7172904 |
tcccaactcagcacatacaacttttg |
7172929 |
T |
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Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 7166413 - 7166617
Alignment:
| Q |
1 |
aaggtctcaaaaagattgattgagat-aacttttattaccaataaataaataatccctggatggaattctgtaagcatgaagctaaacatatatcaaatc |
99 |
Q |
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||||||||||||||||||| |||| | |||||||||||||||| ||||| || || ||||||||||| |||||||| ||||||||||| |||| |||| |
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| T |
7166413 |
aaggtctcaaaaagattgaatgagcttaacttttattaccaatgtataaacaa-ccttggatggaattaagtaagcataaagctaaacatgtatccaatc |
7166511 |
T |
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| Q |
100 |
ttaaggatatagcatccaaatgtgatctcacagcaaggctcatgtctcaagcaaataagtttataataaaatgtgttttcaagcagtgatcccaactcag |
199 |
Q |
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||||||| ||||||||| |||| ||||||||| ||||||||| |||||||||| |||| ||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
7166512 |
ttaaggaaatagcatcccaatgcgatctcacaaaaaggctcatatctcaagcaagtaagcttatagtaaaatatgttttcaagcagcgatcccaactcag |
7166611 |
T |
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| Q |
200 |
cacata |
205 |
Q |
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|||||| |
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| T |
7166612 |
cacata |
7166617 |
T |
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