View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_688 (Length: 213)
Name: NF10481A_low_688
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_688 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 32880110 - 32879935
Alignment:
| Q |
23 |
gaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtctt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32880110 |
gaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgactt |
32880011 |
T |
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| Q |
123 |
tatacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttcattt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32880010 |
tatacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggtttattt |
32879935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 32898982 - 32898807
Alignment:
| Q |
23 |
gaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtctt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32898982 |
gaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgactt |
32898883 |
T |
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| Q |
123 |
tatacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttcattt |
198 |
Q |
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| T |
32898882 |
tatacacattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacatcctttcgtggttcattt |
32898807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 32884938 - 32884768
Alignment:
| Q |
23 |
gaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtctt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||| |
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| T |
32884938 |
gaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaag-aggaggagattctatataaaaaagacatatgaatgcctt |
32884840 |
T |
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| Q |
123 |
tatacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttcattt |
198 |
Q |
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|||||||||||||||||||||| | | ||| |||||||||||||||||| |||| || |||||||||||||| |
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| T |
32884839 |
tatacatattcttctaaatcatgt----ttcatatatctttgtcaagtggagtgtacatccattcgtggttcattt |
32884768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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