View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_692 (Length: 212)
Name: NF10481A_low_692
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_692 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 3049 - 3246
Alignment:
| Q |
1 |
tattgtgttggataatgatgaatacattgattcagaaaaagattcacctcccaatgatagcctcaaaggatttgatgtaatcgagaccattaaagccaag |
100 |
Q |
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| T |
3049 |
tattttgttggataatgatgaatacattgattcagagaaagattcacctcc-aatgatagcctcaaaggatttgatgtaatcgagaccattaaagccaag |
3147 |
T |
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| Q |
101 |
cttgaagaagcatgtcctggagttatttcttgtgctgatattcttgtacttgctgcaagagattctgttgttttggtaacattatttatttccctatat |
199 |
Q |
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| T |
3148 |
cttgaagaagcatgtcctggagttgtttcttgtgctgatattcttgtacttgctgcaagagattctgttgttctggtaacattatttatttccctatat |
3246 |
T |
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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 3452268 - 3452360
Alignment:
| Q |
1 |
tattgtgttggataatgatgaatacattgattcagaaaaagattcacctcccaatgatagcctcaaaggatttgatgtaatcgagaccattaaa |
94 |
Q |
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| T |
3452268 |
tattttgttggataatgatgaatacattgattcagagaaagattcacctcc-aatgatagcctcaaaggatttgatgtaatcgagaccattaaa |
3452360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 55186094 - 55186045
Alignment:
| Q |
113 |
tgtcctggagttatttcttgtgctgatattcttgtacttgctgcaagaga |
162 |
Q |
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| T |
55186094 |
tgtcctggagttgtttcctgttctgatattcttgttctttctgcaagaga |
55186045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 32309760 - 32309829
Alignment:
| Q |
108 |
aagcatgtcctggagttatttcttgtgctgatattcttgtacttgctgcaagagattctgttgttttggt |
177 |
Q |
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| T |
32309760 |
aagcatgtcccggcgttgtgtcttgtgctgatatacttgctcttgccgcaagagattccgttcttttggt |
32309829 |
T |
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