View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_694 (Length: 212)
Name: NF10481A_low_694
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_694 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 340856 - 340664
Alignment:
| Q |
1 |
gtagtgaacatgcaatggatcagtgttgataacaccatacatgccggtaaaccatggtcctaggaactcaattgttccaccttttgatttcaacaattta |
100 |
Q |
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| T |
340856 |
gtagtgaacattcaatggatcagttgtgataacaccatacatgccggtaaaccatggtcctaggaactcaattgttccaccttttgatttcaacaattta |
340757 |
T |
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| Q |
101 |
gctgaaaattcatgaatttgtgatatgttccaaaggaattgtggtaacataccaagaaaaggccaatttgtgaaggctggggttttgaggtat |
193 |
Q |
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| T |
340756 |
gctgaaaaatcatgaatttgtgatatgttccaaaggaattgtggtaacataccaagaaaaggccaatttgtgaaggctggggttttgaggtat |
340664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 336818 - 336629
Alignment:
| Q |
1 |
gtagtgaacatgcaatggatcagtgttgataacaccatacatgccggtaaaccatggtcctaggaactcaattgttccaccttttgatttcaacaattta |
100 |
Q |
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||||||||||| ||||||||| | |||| ||| |||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| |
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| T |
336818 |
gtagtgaacattcaatggatcgtttgtgattacagcatacatgttggtaaaccatggtcctatgaactccattgttccaccttttgatgtcaacaattta |
336719 |
T |
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| Q |
101 |
gctgaaaattcatgaatttgtgatatgttccaaaggaattgtggtaacataccaagaaaaggccaatttgtgaaggctggggttttgagg |
190 |
Q |
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| T |
336718 |
gctgaaaaatcatggatgtctgatatgttccaaaggaattgtggtaacataccaacaaaaggccaatttgtgaaggctggggttttgagg |
336629 |
T |
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