View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_7 (Length: 626)

Name: NF10481A_low_7
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_7
NF10481A_low_7
[»] chr1 (6 HSPs)
chr1 (1-611)||(9804675-9805289)
chr1 (1-284)||(9806507-9806792)
chr1 (8-435)||(9817777-9818211)
chr1 (496-626)||(9817563-9817693)
chr1 (493-625)||(9817445-9817577)
chr1 (503-611)||(9817341-9817448)
[»] scaffold0432 (3 HSPs)
scaffold0432 (3-432)||(11788-12228)
scaffold0432 (489-625)||(11572-11708)
scaffold0432 (493-611)||(11467-11585)
[»] chr7 (1 HSPs)
chr7 (281-435)||(42778749-42778900)
[»] chr8 (2 HSPs)
chr8 (1-67)||(2371052-2371117)
chr8 (197-282)||(2370822-2370910)


Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 9805289 - 9804675
Alignment:
Q  1 gagaatcaaggtatattgtgatttatttattttagtcggttattcaaatatgtacttgtgtttgttattttctatttgcttctaatacacattttatata 100  Q
    |||||||||||||||||||||||| |||  |||| ||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||||     
T  9805289 gagaatcaaggtatattgtgattttttt--tttattcggttattaaaatatgtacttgtatttgttattttctatttacttctagtacacattttatatt 9805192  T
Q  101 taatttttgtacacagg------------ggaaaaggaattattggtgaacaa--tgaagaggaggccactatagaagaggaggaagactattccccaaa 186  Q
     |||||||||||| |||            |||||||||||| ||| |||||||  |||| ||     ||||   || ||||||||||||| |||||||||    
T  9805191 aaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaag-----cactggtgatgaggaggaagactcttccccaaa 9805097  T
Q  187 g-taaggtggggaatttgaagagtagaataagaaattcatgtctacccaataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaac 285  Q
    | |||| ||||||||||||||||||   |||||||| ||||| |    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9805096 ggtaagatggggaatttgaagagta---taagaaatccatgtgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaac 9805000  T
Q  286 cactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaat 385  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||        |||||||||||||||||||||||||| ||||||||||    
T  9804999 cactcacataaaagacaaccacaaatttgagaaagacatgcaaaatgatctagataaaaaaa-atatgaaaaaagtttggattacctttcttgcccaaat 9804901  T
Q  386 aatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactggtcgatgtcgatctcagtgaagt 485  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9804900 aatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactgatcgatgtcgatctcagtgaagt 9804801  T
Q  486 ttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaa 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9804800 ttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggttggcaacagcgattgagggagaaaattgtgtttagggtttcaa 9804701  T
Q  586 gagaatgagaaatgaggatgggagga 611  Q
    ||||||||||||||||||||||||||    
T  9804700 gagaatgagaaatgaggatgggagga 9804675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 9806507 - 9806792
Alignment:
Q  1 gagaatcaaggtatattgtgatttatttattttagtcggttattcaaatatgtacttgtgtttgttattttctatttgcttctaatacacattttatata 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  9806507 gagaatcaaggtatattgtgatttatttattttagttggttattcaaatatgtacttgtgtttgttattttctatttgtttctaatacacattttatatt 9806606  T
Q  101 taatttttgtacacaggggaaaaggaattattggtgaacaa--tgaagaggaggccactatagaagaggaggaagactattccccaaagtaaggtgggga 198  Q
    ||||||||||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9806607 taatttttgtacacaagggaaaaggaattattgttgaacaaaatgaagaggaggccactatagaagaggaggaagactattcccgaaagtaaggtgggga 9806706  T
Q  199 atttgaagagtagaataagaaattcatgtctacccaataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa 284  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9806707 atttgaagagtagaataagaagttcatgtctacccaataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa 9806792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 9818211 - 9817777
Alignment:
Q  8 aaggtatattgtgatttatttattttagtcggttattcaaatatgtacttgtgtttgttattttctatttgcttctaatacacattttatatataatttt 107  Q
    ||||||||||||||||||||| |||||  |||||||| || ||||||||||| ||||||||||||||||| |||||| |||||| |||||||  ||||||    
T  9818211 aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt 9818112  T
Q  108 tgtacacagg------------ggaaaaggaattattggtgaacaa--tgaagaggaggccactatagaagaggaggaagactattccccaaag-taagg 192  Q
    |||||||| |            |||||||||||| ||| |||||||  |||| ||     |||||  || ||||||||||||| |||||||||| ||||     
T  9818111 tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaag-----cactagtgatgaggaggaagactcttccccaaaggtaaga 9818017  T
Q  193 tggggaatttgaagagtagaataagaaattcatgtctacccaataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcac 292  Q
    ||||||||||||||||||||| ||||||| ||||| ||   |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  9818016 tggggaatttgaagagtagaa-aagaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactcac 9817918  T
Q  293 ataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaa 392  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||        || || ||||||||| ||||||||||||||||||||||||| ||    
T  9817917 ataaaagacaaccacaaatcagagaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcccaaataatggaa 9817820  T
Q  393 cgaggttgaagtttcatgaaaactccatcaaaagagataacca 435  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  9817819 cgaggttgaagtttcatgaaaattccatcaaaagagataacca 9817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 496 - 626
Target Start/End: Complemental strand, 9817693 - 9817563
Alignment:
Q  496 ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga 595  Q
    ||||||||||||||||||||||||||  ||| || |||||||||||||| ||||||||  |||||| ||||||| ||||||||||||||||| |||||||    
T  9817693 ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga 9817594  T
Q  596 aatgaggatgggaggattattttgtttgatt 626  Q
    |||||||||||||||||| ||||||||||||    
T  9817593 aatgaggatgggaggattcttttgtttgatt 9817563  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 493 - 625
Target Start/End: Complemental strand, 9817577 - 9817445
Alignment:
Q  493 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 592  Q
    ||||||| | |||| |||||||||||||   |||||| ||||||||||||||||| | |||  |||||||||||| ||||||||||||||||| ||||||    
T  9817577 ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg 9817478  T
Q  593 agaaatgaggatgggaggattattttgtttgat 625  Q
    |||||||||||| |||||||| ||||| |||||    
T  9817477 agaaatgaggattggaggattcttttgattgat 9817445  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 503 - 611
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
Q  503 tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg 602  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||| |||||  |||||||||||| | ||||||||||||| ||||||||||||||||||    
T  9817448 tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg 9817350  T
Q  603 atgggagga 611  Q
    |||||||||    
T  9817349 atgggagga 9817341  T

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Target: scaffold0432 (Bit Score: 172; Significance: 4e-92; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 3 - 432
Target Start/End: Complemental strand, 12228 - 11788
Alignment:
Q  3 gaatcaaggtatattgtgatttatttattttagtcggttattcaaatatgtacttgtgtttgttattttctatttgcttctaatacacattttatatata 102  Q
    ||||||| |||| ||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||| ||||| |||||| ||| ||||||||||  |    
T  12228 gaatcaacgtattttgtgatttattt-ttttagttggttattcaattatgtacttatgtttgttattttatatttacttctagtac-cattttatattaa 12131  T
Q  103 atttttgtacac------------aggggaaaaggaattattggtgaacaa--tgaagaggaggccactatagaagaggaggaagactattccccaaagt 188  Q
    ||||| ||||||            | |||| |||||||| ||| |||||||  |||| |||| |||||||  ||  | |||||||||| ||||| |||||    
T  12130 attttggtacacgataatgcagcgaagggagaaggaattcttgttgaacaaaatgaaaaggatgccactagtgataacgaggaagactcttccctaaagt 12031  T
Q  189 aaggtggggaatttgaagagtagaataagaaattcatgtctacccaataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaaccac 288  Q
    ||| |||||||||||||||||||||||||||||  |||| |||  |||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  12030 aagatggggaatttgaagagtagaataagaaatctatgtgtacataataaaataaaataaaattcatgtatttattacatagtatgatgtttgaaatcac 11931  T
Q  289 tcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatg-aaaaaagtttggattaccttttttgcccaaataa 387  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||  ||||        || || |||||||||  ||||||||||| ||||||| |||    
T  11930 tcacataaaagacaaccacaaatcagataaagacatgcaaaattatatagataaaaca--atgtgaaaaaaagttaagattaccttttatgcccaattaa 11833  T
Q  388 tgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11832 tgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa 11788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 625
Target Start/End: Complemental strand, 11708 - 11572
Alignment:
Q  489 atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag 588  Q
    ||||||||||||||  |||||||| |||||||| ||||||| || |||||||||||| | |||   ||||| || |||| ||||||| | | ||||||||    
T  11708 atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag 11609  T
Q  589 aatgagaaatgaggatgggaggattattttgtttgat 625  Q
    |||| ||| |||||||||||||||| |||||||||||    
T  11608 aatgggaagtgaggatgggaggattcttttgtttgat 11572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 493 - 611
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
Q  493 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 592  Q
    ||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || ||   ||||||||||| | ||| | || ||||| ||||||     
T  11585 ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata 11486  T
Q  593 agaaatgaggatgggagga 611  Q
    |||||||||||||||||||    
T  11485 agaaatgaggatgggagga 11467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 281 - 435
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
Q  281 gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc 380  Q
    ||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| ||||        || ||||||||||||||||||||||||||||     
T  42778749 gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct 42778846  T
Q  381 caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca 435  Q
    ||| | |||||||||||||||| || |||||||||||| ||||||||||||||||    
T  42778847 caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca 42778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2371117 - 2371052
Alignment:
Q  1 gagaatcaaggtatattgtgatttatttattttagtcggttattcaaatatgtacttgtgtttgtta 67  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||||||||    
T  2371117 gagaatcaaggtatattgtgatttattt-ttttagtcgattattcaaatatatacttatgtttgtta 2371052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 2370910 - 2370822
Alignment:
Q  197 gaatttgaagagtagaataagaaattcatgtct--acccaataaaataa-aataaaatccatgtatttattacatagtatgatgtttga 282  Q
    ||||||||||| ||||||| ||||| ||||| |  |||||| ||||||| ||| | |||||||| ||||||||| ||||||||||||||    
T  2370910 gaatttgaagactagaatatgaaatccatgtgtgtacccaaaaaaataataattagatccatgtgtttattacaaagtatgatgtttga 2370822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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