View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_702 (Length: 210)
Name: NF10481A_low_702
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_702 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 29159354 - 29159148
Alignment:
| Q |
1 |
aaccataggagagtcaatagccgctacattttctttgccatcgtgactttccttttcctcaatcaaacacaaagaagcgccttcagctatattctcaacc |
100 |
Q |
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| T |
29159354 |
aaccataggagagtcaatagccgctacattttctttgccatcatgactttccttttcctcaatcaaacacaaagaagcgccttcagctatattctcaacc |
29159255 |
T |
|
| Q |
101 |
gaaacacgaaattcctctgatttgacagcatcagagacacaatccaaatcaccgcgaacaccatcaacttccatagacctatgctcaacatctaacccaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29159254 |
gaaacacgaaattcctctgatttgacagcatcagagacacaatccaaatcaccacgaacaccatcaacttccatagacctatgctcaacatctaacccaa |
29159155 |
T |
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| Q |
201 |
cttctcc |
207 |
Q |
| |
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||||||| |
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| T |
29159154 |
cttctcc |
29159148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29159405 - 29159373
Alignment:
| Q |
1 |
aaccataggagagtcaatagccgctacattttc |
33 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
29159405 |
aaccataggagagtcaatagccgccacattttc |
29159373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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