View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_703 (Length: 210)
Name: NF10481A_low_703
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_703 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 12587697 - 12587531
Alignment:
| Q |
19 |
caatttataaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggaccagctaacacaattctgatttacaccaacacaacacacgtcc |
118 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12587697 |
caatttctaaaatatcaaacaatcccacccagtagcccaactgcccaatcccaaggcccagctaacacaattctgatttacaccaacacaacacaggtcc |
12587598 |
T |
|
| Q |
119 |
cgccatccacaatttacaatcatggtttctttctttctttctcacagtgaacaaacaaactccctct |
185 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12587597 |
cgccatccacaatttacaatcacggtttctttctttctttctcacagtgaacaaacaaactccctct |
12587531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 27324686 - 27324645
Alignment:
| Q |
144 |
tttctttctttctttctcacagtgaacaaacaaactccctct |
185 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27324686 |
tttctttctttctttctcacggtgaacaaacaaactccctct |
27324645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 22969929 - 22970099
Alignment:
| Q |
19 |
caatttataaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggaccagctaacacaattctgatttacaccaacacaacacacgtcc |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22969929 |
caatttctaaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggcccagctaacacaattctgatttacatcaacacaacacacgtcc |
22970028 |
T |
|
| Q |
119 |
cgccatccacaatttacaatcatgg----tttctttctttctttctcacagtgaacaaacaaactccctct |
185 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22970029 |
cgccatccacaatttacaatcacggtttctttctttctttctttctcacagtgaacaaacaaactccctct |
22970099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 22962643 - 22962718
Alignment:
| Q |
20 |
aatttataaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggaccagctaacacaattctgat |
95 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
22962643 |
aatttctaaaatatcaaacactctcacccaatagcccaactgcccaatcccaaagcccagctaacacaattctgat |
22962718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 21880696 - 21880526
Alignment:
| Q |
19 |
caatttataaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggaccagctaacacaattctgatttacaccaacacaacacacgtcc |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21880696 |
caatttctaaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggcccagctaacacaattctgatttacatcaacacaacacacgtcc |
21880597 |
T |
|
| Q |
119 |
cgccatccacaatttacaatcatggtttctttctttct----ttctcacagtgaacaaacaaactccctct |
185 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21880596 |
cgccatccacaatttacaatcacggtttctttctttctttctttctcacagtgaacaaacaaactccctct |
21880526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 6900459 - 6900625
Alignment:
| Q |
19 |
caatttataaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggaccagctaacacaattctgatttacaccaacacaacacacgtcc |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6900459 |
caatttctaaaatatcaaacactcccactcagtagcccaactgcccaatcccaaggcccagttaacacaattctgattcacaccaacacaacacacgtcc |
6900558 |
T |
|
| Q |
119 |
cgccatccacaatttacaatcatggtttctttctttctttctcacagtgaacaaacaaactccctct |
185 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
6900559 |
cgccatccacaattcacaatcacgctttctttctttctttcttacagtgaacaaacaaacaccctct |
6900625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 49603248 - 49603078
Alignment:
| Q |
19 |
caatttataaaatatcaaacactcccacccagtagcccaactgcccaatcccaaggaccagctaacacaattctgatttacaccaacacaacacacgtcc |
118 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49603248 |
caatttctaaaatatcaaacactcctacccagtagcctaactgcccaatcccaaggcccaactaacacaattctgattcacaccaacacaacacacgtcc |
49603149 |
T |
|
| Q |
119 |
cgccatccacaatttacaatcatggtttctttctt----tctttctcacagtgaacaaacaaactccctct |
185 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49603148 |
cgccatccacaattcacaatcacgctttctttctttctctctttctcacagtgaacaaacaaactccctct |
49603078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University