View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_709 (Length: 208)
Name: NF10481A_low_709
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_709 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 7839613 - 7839787
Alignment:
| Q |
20 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7839613 |
cactaagagcacaaactcttttcaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
7839712 |
T |
|
| Q |
120 |
gctctttctttgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcatctc |
194 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7839713 |
gctctttctctgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcatctc |
7839787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 7762944 - 7763098
Alignment:
| Q |
20 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
119 |
Q |
| |
|
|||| ||||||||||| | | |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
7762944 |
cactgagagcacaaacacgattcaaagccaacctccatgctttcaccttctccgattcctttccaaatctattttcatgtttcatcattgcaatttcata |
7763043 |
T |
|
| Q |
120 |
gctctttctttga-tgtctaacatcagaagcttccaccttataaaatataacaaa |
173 |
Q |
| |
|
|| || || ||| | |||||||| |||| ||| | ||||||||| |||||||| |
|
|
| T |
7763044 |
actattcctctgactacctaacatctgaaggttctatcttataaaaaataacaaa |
7763098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 7755491 - 7755571
Alignment:
| Q |
20 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgtt |
100 |
Q |
| |
|
|||| ||||||||||||| | |||||| || ||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7755491 |
cactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctccgattcccttccaaatctcttttcatgtt |
7755571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University