View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_710 (Length: 208)
Name: NF10481A_low_710
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_710 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 17032159 - 17032341
Alignment:
| Q |
21 |
gctatattattctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctat-------c |
113 |
Q |
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| T |
17032159 |
gctatattgttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtctactatcattgaac |
17032258 |
T |
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| Q |
114 |
aatgaacatagtcaggatgtttggccataggaattgggaatatcattctacgaaatcaaatatattcttcttgtgatgtccat |
196 |
Q |
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| T |
17032259 |
aatgaacatagtcaggatgtttggccataggaattgggaatatcattctacgaaaccaaatatattcttcttgtgatgtccat |
17032341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 17048571 - 17048742
Alignment:
| Q |
30 |
ttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctatca-------atgaacat |
122 |
Q |
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| T |
17048571 |
ttctatatatagtacaaatattgggttcaaagtacaaagatacgtgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacat |
17048670 |
T |
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| Q |
123 |
agtcaggatgtttggccataggaattgggaatatcattctacgaaatcaaatatattcttcttgtgatgtcc |
194 |
Q |
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| T |
17048671 |
agtcaggatgtttggcaataggaattgggaatatcattatatgaaatcaaatatattcttcttgtgatgtcc |
17048742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 17042705 - 17042875
Alignment:
| Q |
30 |
ttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctatc-------aatgaacat |
122 |
Q |
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| T |
17042705 |
ttctatatatagtacaaatattgggttcaaagtacaaagatacgtgaaaatttgtgtggccatttataaagttagtctactatcattgaaaaatgaacat |
17042804 |
T |
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| Q |
123 |
agtcaggatgtttggccataggaattgggaatatcattctacgaaatca---aatatattcttcttgtgat |
190 |
Q |
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| T |
17042805 |
agtcaggatgtttggcaataggaattgggaatatcattatatgaaatcaaataatatattcttcttgtgat |
17042875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 17036930 - 17037062
Alignment:
| Q |
74 |
tgaaaatttgtgtggccatttataaagttagtttgctatca-------atgaacatagtcaggatgtttggccataggaattgggaatatcattctacga |
166 |
Q |
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| T |
17036930 |
tgaaaatttttgtggccatttataaagttagtcagctatcattgaaaaatgaacatagtcaggatgtttggcaataggaattgggaatatcattatatga |
17037029 |
T |
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| Q |
167 |
aatca---aatatattcttcttgtgatgtccat |
196 |
Q |
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| T |
17037030 |
aatcaaataatatattcttcttgtgatgtccat |
17037062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 16994819 - 16994987
Alignment:
| Q |
30 |
ttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctat-------caatgaacat |
122 |
Q |
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| T |
16994819 |
ttctatatatattacaaatattgggttcaaagcacaaagatacttgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacat |
16994918 |
T |
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| Q |
123 |
agtcaggatgtttggccataggaattgggaatatcattctacgaaatcaaatatattcttcttgtgatgtcc |
194 |
Q |
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| T |
16994919 |
agtcaggatgtttggcaaaaggaatt-ggtatattat--tatgaaatcaaatatattcttcttgtgatgtcc |
16994987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 17018054 - 17018222
Alignment:
| Q |
30 |
ttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctat-------caatgaacat |
122 |
Q |
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| T |
17018054 |
ttctatatatattacaaatattgggttcaaagcacaaagatacttgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacat |
17018153 |
T |
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| Q |
123 |
agtcaggatgtttggccataggaattgggaatatcattctacgaaatcaaatatattcttcttgtgatgtcc |
194 |
Q |
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| T |
17018154 |
agtcaggatgtttggcaaaaggaatt-ggtatattat--tatgaaatcaaatatattcttcttgtgatgtcc |
17018222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 16988137 - 16988218
Alignment:
| Q |
33 |
tatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctatca |
114 |
Q |
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| T |
16988137 |
tatatatagtacatatattgtgttcaaagtacaaatatacgtgtaaatttgtgtggccatgtataaagtttgtttgcaatca |
16988218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 17017288 - 17017365
Alignment:
| Q |
32 |
ctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgc |
109 |
Q |
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| T |
17017288 |
ctatatatagtacagatattgtgttcaaagtacaaatatacgtgaaaatttgtgtggtcttgtataaagtttgtttgc |
17017365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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