View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_723 (Length: 206)

Name: NF10481A_low_723
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_723
NF10481A_low_723
[»] chr6 (7 HSPs)
chr6 (20-189)||(32931414-32931583)
chr6 (60-106)||(32920995-32921041)
chr6 (65-111)||(26493515-26493561)
chr6 (60-106)||(32926296-32926342)
chr6 (61-113)||(2468472-2468524)
chr6 (65-113)||(4005137-4005185)
chr6 (59-87)||(10338615-10338643)
[»] chr8 (4 HSPs)
chr8 (58-113)||(10440378-10440433)
chr8 (59-111)||(5739597-5739649)
chr8 (61-113)||(9696043-9696095)
chr8 (61-113)||(29651758-29651810)
[»] chr7 (2 HSPs)
chr7 (64-113)||(34395025-34395074)
chr7 (60-107)||(47450466-47450513)
[»] chr3 (6 HSPs)
chr3 (60-117)||(33331939-33331996)
chr3 (61-111)||(14032927-14032977)
chr3 (64-118)||(19129368-19129422)
chr3 (60-105)||(20167628-20167673)
chr3 (58-87)||(31652453-31652482)
chr3 (60-112)||(17105269-17105321)
[»] chr4 (5 HSPs)
chr4 (61-113)||(22402391-22402443)
chr4 (59-105)||(21606601-21606647)
chr4 (61-113)||(7422170-7422222)
chr4 (61-113)||(27131672-27131724)
chr4 (59-111)||(43978397-43978449)
[»] chr1 (1 HSPs)
chr1 (62-105)||(50186075-50186118)
[»] chr5 (2 HSPs)
chr5 (61-123)||(27249571-27249632)
chr5 (61-105)||(28735820-28735864)
[»] chr2 (3 HSPs)
chr2 (64-117)||(5453721-5453774)
chr2 (60-113)||(8518039-8518092)
chr2 (61-105)||(31095151-31095195)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 32931583 - 32931414
Alignment:
Q  20 ctttagaccatgaaacactgacaatgacacgtgaaaagcgataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggacatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32931583 ctttagaccatgaaacactgacaatgacacgtgaaaagcgataataatttaagaaaatagaagtgattaaatataactacatgtgtcggtgtcggacatt 32931484  T
Q  120 gacacatgtataacactggacacgccatcaatacgaggtgtcagtgctacatactttcagacgtctatgc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32931483 gacacatgtataacactggacacgccatcaatacgaggtgtcagtgctacatactttcagacgtctatgc 32931414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 32921041 - 32920995
Alignment:
Q  60 ataataatttaagaaaatagaagtgatttaatataactacatgtgtc 106  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||    
T  32921041 ataataatttaagaaaattgaagtgatttaatgtagctacatgtgtc 32920995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 26493561 - 26493515
Alignment:
Q  65 aatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 111  Q
    ||||| ||||||||||||||||| ||| ||||||||||| |||||||    
T  26493561 aatttgagaaaatagaagtgattgaatgtaactacatgtatcggtgt 26493515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 32926342 - 32926296
Alignment:
Q  60 ataataatttaagaaaatagaagtgatttaatataactacatgtgtc 106  Q
    |||||||||||||||||| ||||||||||| | || |||||||||||    
T  32926342 ataataatttaagaaaattgaagtgatttagtgtagctacatgtgtc 32926296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 2468524 - 2468472
Alignment:
Q  61 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 113  Q
    ||||||||||||||||| ||||| ||| ||| |||| |||||||| |||||||    
T  2468524 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 2468472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 4005137 - 4005185
Alignment:
Q  65 aatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 113  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||| ||||||    
T  4005137 aatttaataaaatagaagtgattgaatgtaattacatgtgtcagtgtcg 4005185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 10338615 - 10338643
Alignment:
Q  59 gataataatttaagaaaatagaagtgatt 87  Q
    |||||||||||||||||||||||||||||    
T  10338615 gataataatttaagaaaatagaagtgatt 10338643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 10440378 - 10440433
Alignment:
Q  58 cgataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 113  Q
    ||||||||||||||||||||| |||||||| ||| | ||||||||||||| |||||    
T  10440378 cgataataatttaagaaaataaaagtgattgaatgttactacatgtgtcgttgtcg 10440433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 5739597 - 5739649
Alignment:
Q  59 gataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 111  Q
    ||||||||||| ||||||| ||| ||||| ||| ||| |||||||||||||||    
T  5739597 gataataatttgagaaaatggaaatgattgaatgtaagtacatgtgtcggtgt 5739649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 9696043 - 9696095
Alignment:
Q  61 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 113  Q
    |||||||||||| |||| ||||||||| ||||||||| || |||| |||||||    
T  9696043 taataatttaaggaaatggaagtgattgaatataacttcacgtgttggtgtcg 9696095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 29651810 - 29651758
Alignment:
Q  61 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 113  Q
    ||||| ||||||||||||||||||||| ||  |||| |||||||| |||||||    
T  29651810 taatagtttaagaaaatagaagtgattgaacgtaacaacatgtgttggtgtcg 29651758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 34395025 - 34395074
Alignment:
Q  64 taatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 113  Q
    |||||||||||||||||||||||| ||| |||| ||| ||||||||||||    
T  34395025 taatttaagaaaatagaagtgattgaatctaaccacacgtgtcggtgtcg 34395074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 47450513 - 47450466
Alignment:
Q  60 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcg 107  Q
    ||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  47450513 ataataatttaagaaaatagaatggatttagtataactatatgtgtcg 47450466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 33331996 - 33331939
Alignment:
Q  60 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggaca 117  Q
    |||||||||| |||||||| |||||||| ||| ||| |||||||||||||||| ||||    
T  33331996 ataataatttgagaaaataaaagtgattaaatgtaattacatgtgtcggtgtcagaca 33331939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 14032927 - 14032977
Alignment:
Q  61 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 111  Q
    ||||||||||||||||||||||||||| | |||||| |||| ||| |||||    
T  14032927 taataatttaagaaaatagaagtgattaagtataacaacatatgttggtgt 14032977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 19129422 - 19129368
Alignment:
Q  64 taatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggacat 118  Q
    |||||||||||||  | | ||||| ||||||||||||||||||||||||| ||||    
T  19129422 taatttaagaaaaatggaatgattgaatataactacatgtgtcggtgtcgtacat 19129368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 20167628 - 20167673
Alignment:
Q  60 ataataatttaagaaaatagaagtgatttaatataactacatgtgt 105  Q
    ||||||||||||| |||||||||||||||||| |||| ||| ||||    
T  20167628 ataataatttaaggaaatagaagtgatttaatgtaaccacacgtgt 20167673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 31652453 - 31652482
Alignment:
Q  58 cgataataatttaagaaaatagaagtgatt 87  Q
    ||||||||||||||||||||||||||||||    
T  31652453 cgataataatttaagaaaatagaagtgatt 31652482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 17105269 - 17105321
Alignment:
Q  60 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtc 112  Q
    ||||||||||||||||||| |||||||| ||| ||||  ||| ||||||||||    
T  17105269 ataataatttaagaaaataaaagtgattgaatgtaacctcatttgtcggtgtc 17105321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 22402391 - 22402443
Alignment:
Q  61 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 113  Q
    |||||| || ||||||||||||||||| ||| |||| ||||||||||||||||    
T  22402391 taataaattgagaaaatagaagtgattgaatgtaaccacatgtgtcggtgtcg 22402443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 21606647 - 21606601
Alignment:
Q  59 gataataatttaagaaaatagaagtgatttaatataactacatgtgt 105  Q
    |||||||||||||||||||| |||||||| | | |||||||||||||    
T  21606647 gataataatttaagaaaataaaagtgattaagtgtaactacatgtgt 21606601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 7422170 - 7422222
Alignment:
Q  61 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 113  Q
    ||||||||| ||||||||||||||||| ||| ||| || |||||| |||||||    
T  7422170 taataatttgagaaaatagaagtgattgaatgtaattatatgtgttggtgtcg 7422222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 27131724 - 27131672
Alignment:
Q  61 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 113  Q
    ||||||||||||||||| ||||| ||| ||| |||| |||||||| |||||||    
T  27131724 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 27131672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 43978449 - 43978397
Alignment:
Q  59 gataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 111  Q
    |||||||||||||||||| |||||||||  ||| |||||| |||||| |||||    
T  43978449 gataataatttaagaaaacagaagtgatagaatgtaactatatgtgttggtgt 43978397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 50186118 - 50186075
Alignment:
Q  62 aataatttaagaaaatagaagtgatttaatataactacatgtgt 105  Q
    |||||||| | ||||||||||||||||||| |||||||||||||    
T  50186118 aataattttacaaaatagaagtgatttaatgtaactacatgtgt 50186075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 27249571 - 27249632
Alignment:
Q  61 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggacattgaca 123  Q
    |||||||||| |||||| ||||||||| ||| || | |||||||| |||||||||||||||||    
T  27249571 taataatttatgaaaatggaagtgattaaatgtagc-acatgtgttggtgtcggacattgaca 27249632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 28735864 - 28735820
Alignment:
Q  61 taataatttaagaaaatagaagtgatttaatataactacatgtgt 105  Q
    ||||||||||||||||||||||||||| ||| ||| || ||||||    
T  28735864 taataatttaagaaaatagaagtgattgaatgtaattatatgtgt 28735820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 5453721 - 5453774
Alignment:
Q  64 taatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggaca 117  Q
    |||||||||||||| ||||||||| |||||||| ||||| ||| || |||||||    
T  5453721 taatttaagaaaatggaagtgattgaatataaccacatgagtcagtatcggaca 5453774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 8518039 - 8518092
Alignment:
Q  60 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 113  Q
    |||| ||||| ||||||||||||| ||| ||| |||||| ||||||||||||||    
T  8518039 ataacaatttgagaaaatagaagtaattgaatgtaactaaatgtgtcggtgtcg 8518092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 31095151 - 31095195
Alignment:
Q  61 taataatttaagaaaatagaagtgatttaatataactacatgtgt 105  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||||||    
T  31095151 taataatttgagaaaatggaagtaattgaatataactacatgtgt 31095195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University