View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_724 (Length: 206)
Name: NF10481A_low_724
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_724 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 19192450 - 19192334
Alignment:
| Q |
11 |
tcgaataatattgtggatgcaaatcggtgaagttcgatggtgaagatgaagaaagagtgaagttcaatggttcaattgagagttcgtgtgaaactcgatg |
110 |
Q |
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| T |
19192450 |
tcgaacaatgttgtggatgcaaatcggtgaagttcgatggtgaagatgaagaaagagtgaagttcaatggttcaagtgagagttcgtgtgaagctcgatg |
19192351 |
T |
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| Q |
111 |
ggtgaatatgagaatga |
127 |
Q |
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| T |
19192350 |
ggtgaatatgagaatga |
19192334 |
T |
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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 35712991 - 35712924
Alignment:
| Q |
126 |
gattaatcgaaacggtaacggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcc |
193 |
Q |
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| T |
35712991 |
gattgatcgaaacggtaacggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcc |
35712924 |
T |
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Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 13385200 - 13385270
Alignment:
| Q |
123 |
aatgattaatcgaaacggtaacggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcc |
193 |
Q |
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| T |
13385200 |
aatgatttatcgaaacggtaacggtggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcc |
13385270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 23485567 - 23485508
Alignment:
| Q |
134 |
gaaacggtaacggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcc |
193 |
Q |
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| T |
23485567 |
gaaacagtaacggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcc |
23485508 |
T |
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